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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Cucsa.012130.1 |
| Common Name | Csa_5G545560, LOC101209321 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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| Family |
C2H2 |
| Protein Properties |
Length: 473aa MW: 51958 Da PI: 5.9936 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cucsa.012130.1 | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 14.8 | 8.5e-05 | 123 | 145 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++Cp+Cg+s+++ ++ +H ++
Cucsa.012130.1 123 FECPICGRSYRSEEEVSVHVDSC 145
89*****************8776 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 473 aa
Download sequence Send
to blast |
MGDVKDKVKG FMKRFNNTLS SSSSTNFKGQ GRVLGSSSSG STSSMPTRPS ENPISKPKLV 60
SPPSNSSANS KPPVANSIAT GQNRSDPSNT SNPDRIPADG FDPFDSFITS GKRSGNGYSL 120
NVFECPICGR SYRSEEEVSV HVDSCVNDST AKGAEDPPTS DAEPRSELEA CIGTFLSGKP 180
TQGSLDIVLK LLRNIVREPE NSKFRKIRLS NPKIKEAIGE AVGGVELLEF VGFKLQEEDG 240
EMWATMEVPT EEQINLLCKV IDLIDQPKLE EQQKKASTAP DLIEPKKVDR QIRVFFAVPE 300
NIAAKIELPD SFYRLSVEEV KREAIMRKQK IAESQLLVPK SYKEKQAKAA RRKYTRTVIR 360
IQFPDGVVLQ GVFSPWEPTS ALYEFVSTAL KEPCLEFELI HPVGVKRRTI AHFPAEGEKS 420
KTLDDEELVP SALVKFRPIE TDSVVFTGLR NELLEIIEPL VSGSAVAPPT QV*
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 5ifs_A | 7e-12 | 303 | 436 | 19 | 146 | Tether containing UBX domain for GLUT4 |
| 5ifs_C | 7e-12 | 303 | 436 | 19 | 146 | Tether containing UBX domain for GLUT4 |
| 5ifw_A | 3e-12 | 307 | 436 | 23 | 146 | Tether containing UBX domain for GLUT4 |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Facilitates the interaction of SYP31 and CDC48A, thereby regulating an CDC48A membrane-associated function (Ref.8). Appears to act as a negative regulator mediating the powdery mildew-plant interaction (PubMed:19176722, PubMed:23301616). {ECO:0000269|PubMed:19176722, ECO:0000269|PubMed:23301616, ECO:0000269|Ref.8}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced in response to powdery mildew and by benzothiadiazole (BTH) treatment. {ECO:0000269|PubMed:19176722}. |
| Publications
? help Back to Top |
- Suzuki T,Park H,Till EA,Lennarz WJ
The PUB domain: a putative protein-protein interaction domain implicated in the ubiquitin-proteasome pathway.
Biochem. Biophys. Res. Commun., 2001. 287(5): p. 1083-7
[PMID:11587532] - Rancour DM,Park S,Knight SD,Bednarek SY
Plant UBX domain-containing protein 1, PUX1, regulates the oligomeric structure and activity of arabidopsis CDC48.
J. Biol. Chem., 2004. 279(52): p. 54264-74
[PMID:15498773] - Ren Y, et al.
An integrated genetic and cytogenetic map of the cucumber genome.
PLoS ONE, 2009. 4(6): p. e5795
[PMID:19495411] - Guo S, et al.
Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
BMC Genomics, 2010. 11: p. 384
[PMID:20565788] - Li Z, et al.
RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
BMC Genomics, 2011. 12: p. 540
[PMID:22047402] - Chandran D,Rickert J,Cherk C,Dotson BR,Wildermuth MC
Host cell ploidy underlying the fungal feeding site is a determinant of powdery mildew growth and reproduction.
Mol. Plant Microbe Interact., 2013. 26(5): p. 537-45
[PMID:23301616]
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