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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.011620.1 | ||||||||
Common Name | Csa_5G527900, LOC101218143 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | ZF-HD | ||||||||
Protein Properties | Length: 300aa MW: 33326.4 Da PI: 8.4155 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 101.2 | 7.1e-32 | 74 | 130 | 2 | 59 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 ++++YkeClkNhAas+Gg+a+DGCgEfmps geeg+++al+C AC+CHRnFHR+e e Cucsa.011620.1 74 KHIKYKECLKNHAASMGGNATDGCGEFMPS-GEEGSIEALTCLACNCHRNFHRKEIEG 130 5789*************************9.999********************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 7.0E-29 | 76 | 128 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 2.2E-31 | 77 | 128 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.172 | 78 | 127 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 3.0E-23 | 80 | 131 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 4.33E-20 | 216 | 284 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.7E-31 | 218 | 285 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 8.5E-28 | 223 | 279 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048574 | Biological Process | long-day photoperiodism, flowering | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
LTTHDPPIPI PIPIPLNSRY AGHDHDHNHD HDHIIHHHDS SSTRNHIISA TVNGGNQMEV 60 DLHHHTNNNN NNKKHIKYKE CLKNHAASMG GNATDGCGEF MPSGEEGSIE ALTCLACNCH 120 RNFHRKEIEG EPYDWLHHSR LGRKLLVGGK NMIGPPEPAA FAYPTAGGAT FISSRAATTQ 180 PHHMIMSYNM LGGGGGHSES EEQEEGMGAG VGGRVYSGAM MNKKRFRTKF TAEQKEKMLR 240 FAEKVGWKIQ KQEESVVQQF CQEIGVKRRV LKVWMHNNKH NLAKKDTMSP SHSPNNPLN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 3e-24 | 224 | 281 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681910 | 0.0 | LN681910.1 Cucumis melo genomic scaffold, anchoredscaffold00056. | |||
GenBank | LN713264 | 0.0 | LN713264.1 Cucumis melo genomic chromosome, chr_10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004142854.1 | 0.0 | PREDICTED: zinc-finger homeodomain protein 4 | ||||
Swissprot | Q9M9S0 | 1e-70 | ZHD4_ARATH; Zinc-finger homeodomain protein 4 | ||||
TrEMBL | A0A0A0KSI7 | 0.0 | A0A0A0KSI7_CUCSA; Uncharacterized protein | ||||
STRING | XP_004142854.1 | 0.0 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF206 | 34 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14440.2 | 5e-66 | homeobox protein 31 |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.011620.1 |
Entrez Gene | 101218143 |
Publications ? help Back to Top | |||
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