PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.011410.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB_related
Protein Properties Length: 339aa    MW: 38631.9 Da    PI: 10.4196
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.011410.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.62.5e-17211253145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      ++ W++eEd +l++a+k  G++ W+ Iar+++ gRt++ +k++w+
   Cucsa.011410.1 211 KDTWSEEEDRILIEAHKDIGNR-WAEIARRLP-GRTENTIKNHWN 253
                      679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.1E-11191218IPR009057Homeodomain-like
PROSITE profilePS500904.379192205IPR017877Myb-like domain
SuperFamilySSF466891.0E-23192262IPR009057Homeodomain-like
PROSITE profilePS5129425.086206260IPR017930Myb domain
SMARTSM007171.8E-16210258IPR001005SANT/Myb domain
PfamPF002493.0E-15211253IPR001005SANT/Myb domain
CDDcd001671.34E-12213256No hitNo description
Gene3DG3DSA:1.10.10.603.5E-18219254IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MELGRSSSPS SSSKGLFHSL QLHNNFENHN HNQYLHQYFP INGSSDHHHH HPMNNNNDNH  60
FSIDHGSLQN LLSEIPITTQ YFDPKIEPNF TNNEFSKDQS FENIGANKFM HGFLGCGNNV  120
WTNFPGNFLP QFSQLPNSHL GLGSSSSSSG NFSFIGYDHN KKRKRIQLRK ENKPPKKLPN  180
IIKGQWTPQE DRVGKQCRER WHNHLRPDIR KDTWSEEEDR ILIEAHKDIG NRWAEIARRL  240
PGRTENTIKN HWNATKRRQN SKKFKGRDAD SINNNKTGGY TQPCRRRRRR VLLRVRNGIG  300
IGVGVGVFES AATKRCNEVG DGSAGADLSG ESLINNTI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-321782592107B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1284289RRRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818900.0LN681890.1 Cucumis melo genomic scaffold, anchoredscaffold00048.
GenBankLN7132630.0LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004142853.11e-159PREDICTED: transcription factor MYB98
TrEMBLA0A0A0KSF91e-136A0A0A0KSF9_CUCSA; Uncharacterized protein
STRINGXP_008458923.11e-159(Cucumis melo)
STRINGXP_004142853.11e-159(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2462222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27785.13e-44myb domain protein 118