PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.010690.1
Common NameCsa_5G515000, LOC101212561
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family Dof
Protein Properties Length: 362aa    MW: 39116 Da    PI: 8.4266
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.010690.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof1214.2e-3879139262
          zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                     +e+ lkcprC+stntkfCy+nnysl+qPr+fCk+CrryWt+GGa+rnvPvGgg+r++ k+s
  Cucsa.010690.1  79 PEAGLKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGAMRNVPVGGGCRRSSKRS 139
                     67889***************************************************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074788.0E-3067128IPR003851Zinc finger, Dof-type
PfamPF027011.6E-3182137IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.01283137IPR003851Zinc finger, Dof-type
PROSITE patternPS01361085121IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MVFSSVPVFL DPPNWPSQQP NQLQVSGCET NNAQHLPPPA PSANSGGGGG SGGGGGGGPG  60
SVRPGSMTDR ARLAKIPQPE AGLKCPRCES TNTKFCYFNN YSLTQPRHFC KTCRRYWTRG  120
GAMRNVPVGG GCRRSSKRSS KGGSNNRSKS PGGSSTSTST VSSNSCTTDI ISPQLAHHHH  180
PPPTTHLPFF SQNLHHLSEF GNLGLNFEAL QIPNSLPSSA ESSSVLSSGI ISDHHPWKIP  240
FFGNLHQQNG IYSNFIGDQD HHHQQQTADF TNYQRLSKPL LESGFNHQLE NININNNNNS  300
MKILEDTQGI NNLSRNFLGI QPNEDQFWNS TTTTTTAGNI GWSSDPISDH FNTTSSTTHL  360
L*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132138RRSSKRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818900.0LN681890.1 Cucumis melo genomic scaffold, anchoredscaffold00048.
GenBankLN7132630.0LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004142752.10.0PREDICTED: dof zinc finger protein DOF3.6-like
TrEMBLA0A0A0KNR80.0A0A0A0KNR8_CUCSA; Uncharacterized protein
STRINGXP_004156711.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65634143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55370.29e-38OBF-binding protein 3
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]