PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.005540.1
Common NameCsa_6G404260
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 197aa    MW: 22515.8 Da    PI: 8.7195
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.005540.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.81e-161061155
             AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  Cucsa.005540.1 10 SRYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 61
                    79****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.6E-121061IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-181071IPR016177DNA-binding domain
CDDcd000186.65E-271071No hitNo description
SMARTSM003808.1E-261175IPR001471AP2/ERF domain
PROSITE profilePS5103218.9791169IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-181170IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
RSSGFSRGVS RYRGVARHHH NGRWEARIGR VFGNKYLYLG TYSTQEEAAR AYDIAAIEYR  60
GINAVTNFDL STYIRWLKPQ TNPNPKQQLS PPISSSLFPI DYNTNNTLKS SNNDLHFPIF  120
QSINNDDNNV IIPTNPQTSP RTALGLLLKS SLFKHLVEKN IVNVNEEEDP KDNEVRGLLD  180
FVDDSNINPY FNLHYPX
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818211e-165LN681821.1 Cucumis melo genomic scaffold, anchoredscaffold00040.
GenBankLN7132571e-165LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008456799.11e-128PREDICTED: AP2-like ethylene-responsive transcription factor At1g79700
TrEMBLA0A0A0KJ571e-141A0A0A0KJ57_CUCSA; Uncharacterized protein
STRINGXP_008456799.11e-127(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1955722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.21e-37ERF family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]