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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.005540.1 | ||||||||
Common Name | Csa_6G404260 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | ERF | ||||||||
Protein Properties | Length: 197aa MW: 22515.8 Da PI: 8.7195 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.8 | 1e-16 | 10 | 61 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa+a++ a+ +++g Cucsa.005540.1 10 SRYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 61 79****99**********99966...3.6*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.6E-12 | 10 | 61 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.94E-18 | 10 | 71 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 6.65E-27 | 10 | 71 | No hit | No description |
SMART | SM00380 | 8.1E-26 | 11 | 75 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.979 | 11 | 69 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-18 | 11 | 70 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
RSSGFSRGVS RYRGVARHHH NGRWEARIGR VFGNKYLYLG TYSTQEEAAR AYDIAAIEYR 60 GINAVTNFDL STYIRWLKPQ TNPNPKQQLS PPISSSLFPI DYNTNNTLKS SNNDLHFPIF 120 QSINNDDNNV IIPTNPQTSP RTALGLLLKS SLFKHLVEKN IVNVNEEEDP KDNEVRGLLD 180 FVDDSNINPY FNLHYPX |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681821 | 1e-165 | LN681821.1 Cucumis melo genomic scaffold, anchoredscaffold00040. | |||
GenBank | LN713257 | 1e-165 | LN713257.1 Cucumis melo genomic chromosome, chr_3. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008456799.1 | 1e-128 | PREDICTED: AP2-like ethylene-responsive transcription factor At1g79700 | ||||
TrEMBL | A0A0A0KJ57 | 1e-141 | A0A0A0KJ57_CUCSA; Uncharacterized protein | ||||
STRING | XP_008456799.1 | 1e-127 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF19557 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54320.2 | 1e-37 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.005540.1 |
Publications ? help Back to Top | |||
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