PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Function |

Cis-element |

Publication

Basic Information? help Back to Top

TF ID

Csa36937s010.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

GRAS

Protein Properties

Length: 67aa MW: 7084.03 Da PI: 9.5273

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa36937s010.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	81.4	1.6e-25	1	66	99	162
GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetg 162 N aI eav++e+ vHiiDf+isqG+QW++L++aL +Rp+gpp++RiTg+++p+s+ ++ le +g Csa36937s010.1 1 NGAIAEAVKNESFVHIIDFQISQGGQWVSLIRALGARPGGPPKVRITGIDDPRSSfaRQGGLELVG 66 89*************************************************998877777777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03514	5.4E-23	1	66	IPR005202	Transcription factor GRAS
PROSITE profile	PS50985	20.468	1	67	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 67 aa Download sequence Send to blast
NGAIAEAVKN ESFVHIIDFQ ISQGGQWVSL IRALGARPGG PPKVRITGID DPRSSFARQG 60 GLELVGQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa36937s010.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC012561	5e-72	AC012561.2 Arabidopsis thaliana chromosome I BAC F11F12 genomic sequence, complete sequence.
GenBank	AC079279	5e-72	AC079279.4 Arabidopsis thaliana chromosome 1 BAC F17J6 genomic sequence, complete sequence.
GenBank	AF036302	5e-72	AF036302.1 Arabidopsis thaliana scarecrow-like 5 (SCL5) mRNA, partial cds.
GenBank	AY034929	5e-72	AY034929.1 Arabidopsis thaliana putative scarecrow protein (At1g50600) mRNA, partial cds.
GenBank	AY039611	5e-72	AY039611.1 Arabidopsis thaliana F17J6.12/F17J6.12 mRNA, complete cds.
GenBank	BT000883	5e-72	BT000883.1 Arabidopsis thaliana clone C105359 putative scarecrow protein (At1g50600) mRNA, complete cds.
GenBank	CP002684	5e-72	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010481091.1	2e-41	PREDICTED: scarecrow-like protein 5
Refseq	XP_010500634.1	3e-41	PREDICTED: scarecrow-like protein 5
Swissprot	Q8H125	3e-41	SCL5_ARATH; Scarecrow-like protein 5
TrEMBL	A0A078GCM1	5e-40	A0A078GCM1_BRANA; BnaA06g02700D protein
TrEMBL	D7KGQ4	6e-40	D7KGQ4_ARALL; Uncharacterized protein
TrEMBL	M4EBB8	2e-40	M4EBB8_BRARP; Uncharacterized protein
STRING	Bra026077.1-P	4e-41	(Brassica rapa)
STRING	fgenesh2_kg.1__4145__AT1G50600.1	9e-41	(Arabidopsis lyrata)
STRING	XP_010461911.1	1e-40	(Camelina sativa)
STRING	XP_010481091.1	8e-41	(Camelina sativa)
STRING	XP_010500634.1	1e-40	(Camelina sativa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50600.1	1e-43	scarecrow-like 5

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]