PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa32759s010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 54aa MW: 6082.01 Da PI: 6.4986 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11.8 | 0.00047 | 4 | 24 | 34 | 54 |
TTS-STCHHHHHHHHHHHHHH CS HLH 34 pskKlsKaeiLekAveYIksL 54 ++ K++ +++L +A++Y+k L Csa32759s010.1 4 GGAKMDTVSMLDEAIRYVKFL 24 5789***************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 4.3E-5 | 1 | 28 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 9.566 | 1 | 24 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.24E-6 | 2 | 36 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 54 aa Download sequence Send to blast |
MVPGGAKMDT VSMLDEAIRY VKFLKAQIWF HQNMLVFLND HETTSSCTYS PATG |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa32759s010.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_019084662.1 | 3e-34 | PREDICTED: transcription factor bHLH140-like | ||||
Refseq | XP_019089882.1 | 3e-34 | PREDICTED: transcription factor bHLH140-like isoform X1 | ||||
Refseq | XP_019089883.1 | 3e-34 | PREDICTED: transcription factor bHLH140-like isoform X2 | ||||
Swissprot | Q9M041 | 4e-29 | BH140_ARATH; Transcription factor bHLH140 | ||||
TrEMBL | A0A178UDM7 | 5e-29 | A0A178UDM7_ARATH; Transcription factor bHLH140-like protein | ||||
TrEMBL | A0A384K8T2 | 5e-29 | A0A384K8T2_ARATH; Uncharacterized protein | ||||
STRING | XP_010495035.1 | 9e-33 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15290 | 14 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G01310.1 | 2e-31 | APRATAXIN-like |
Publications ? help Back to Top | |||
---|---|---|---|
|