PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa30146s010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | C3H | ||||||||
Protein Properties | Length: 74aa MW: 8594.58 Da PI: 8.6961 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 25.8 | 1.9e-08 | 33 | 52 | 6 | 26 |
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C+ f+ G C++Gd+C FaHg Csa30146s010.1 33 CPAFRN-GACHRGDSCEFAHG 52 777776.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 12.427 | 27 | 54 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.0E-4 | 27 | 53 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.44E-5 | 28 | 57 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.7E-7 | 32 | 52 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.6E-6 | 33 | 55 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 74 aa Download sequence Send to blast |
TRSHDWTECP YAHRGEKATR RDPRRYTYCA VACPAFRNGA CHRGDSCEFA HGVFEYWLHP 60 ARYRTRACNA GNLC |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Embryo-specific transcription factor required at the globular to heart stage transition in embryo development. {ECO:0000269|PubMed:9501112}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa30146s010.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY292861 | 3e-98 | AY292861.1 Boechera drummondii zing finger transcription factor PEI1 (PEI1), pollen specific glycine-rich protein GRP17 (GRP17), pollen specific glycine-rich protein GRP16 (GRP16), pollen specific glycine-rich protein GRP19 (GRP19), pollen specific glycine-rich protein GRP20 (GRP20), transcription-factor-like protein (Bd5g07580), and WD repeat-like protein (Bd5g07590) genes, complete cds; and oleosin (Bd5g07600) and F box protein family (Bd5g07610) genes, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006286651.1 | 5e-49 | zinc finger CCCH domain-containing protein 54 | ||||
Refseq | XP_010491369.2 | 3e-49 | PREDICTED: zinc finger CCCH domain-containing protein 54 | ||||
Swissprot | O65036 | 6e-50 | C3H54_ARATH; Zinc finger CCCH domain-containing protein 54 | ||||
TrEMBL | Q6V5E1 | 1e-47 | Q6V5E1_OLIPU; Zn-finger transcription factor | ||||
TrEMBL | Q6V5F9 | 1e-47 | Q6V5F9_9BRAS; Zn-finger transcription factor | ||||
STRING | Cagra.2925s0033.1.p | 2e-48 | (Capsella grandiflora) | ||||
STRING | XP_006286651.1 | 2e-48 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11527 | 21 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07500.1 | 3e-52 | C3H family protein |