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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Csa27682s010.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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| Family |
LBD |
| Protein Properties |
Length: 56aa MW: 5569.28 Da PI: 8.6797 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Csa27682s010.1 | genome | CSGP | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 53.3 | 8e-17 | 16 | 56 | 1 | 40 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGas 40
+C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGas
Csa27682s010.1 16 PCGACKFLRRKCVAGCIFAPYFDSEQgAAHFAAVHKVFGAS 56
7***********************9989***********86 PP
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional activator (PubMed:19717544, PubMed:22974309). Involved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19 (PubMed:17259263). Functions in the initiation and emergence of lateral roots, in conjunction with LBD18, downstream of ARF7 and ARF19 (PubMed:19717544, PubMed:23749813). Acts downstream of the auxin influx carriers AUX1 and LAX1 in the regulation of lateral root initiation and development (PubMed:26059335). {ECO:0000269|PubMed:17259263, ECO:0000269|PubMed:19717544, ECO:0000269|PubMed:22974309, ECO:0000269|PubMed:23749813, ECO:0000269|PubMed:26059335}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:17259263, ECO:0000269|PubMed:23749813}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AB473852 | 2e-58 | AB473852.1 Arabidopsis thaliana ASL19 mRNA for ASYMMETRIC LEAVES2-like 19 protein, complete cds. |
| GenBank | AF432232 | 2e-58 | AF432232.1 Arabidopsis thaliana LOB DOMAIN 30 (LBD30) mRNA, complete cds. |
| GenBank | AL161471 | 2e-58 | AL161471.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 1. |
| GenBank | BT026407 | 2e-58 | BT026407.1 Arabidopsis thaliana At4g00220 mRNA, complete cds. |
| GenBank | CP002687 | 2e-58 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. |
| GenBank | DQ446787 | 2e-58 | DQ446787.1 Arabidopsis thaliana clone pENTR221-At4g00220 LOB domain protein 30/lateral organ boundaries domain protein 30 (At4g00220) mRNA, complete cds. |
| GenBank | DQ653168 | 2e-58 | DQ653168.1 Arabidopsis thaliana clone 0000017076_0000011970 unknown mRNA. |
| GenBank | F6N15 | 2e-58 | AF069299.1 Arabidopsis thaliana BAC F6N15. |
| Publications
? help Back to Top |
- Bargmann BO,Birnbaum KD,Brenner ED
An undergraduate study of two transcription factors that promote lateral root formation.
Biochem Mol Biol Educ, 2014 May-Jun. 42(3): p. 237-45
[PMID:24615800] - Cabrera J,Fenoll C,Escobar C
Genes co-regulated with LBD16 in nematode feeding sites inferred from in silico analysis show similarities to regulatory circuits mediated by the auxin/cytokinin balance in Arabidopsis.
Plant Signal Behav, 2015. 10(3): p. e990825
[PMID:25664644] - Lee HW, et al.
Dimerization in LBD16 and LBD18 Transcription Factors Is Critical for Lateral Root Formation.
Plant Physiol., 2017. 174(1): p. 301-311
[PMID:28336771] - Olmo R, et al.
Molecular Transducers from Roots Are Triggered in Arabidopsis Leaves by Root-Knot Nematodes for Successful Feeding Site Formation: A Conserved Post-Embryogenic De novo Organogenesis Program?
Front Plant Sci, 2017. 8: p. 875
[PMID:28603536] - Lee K,Seo PJ
High-temperature promotion of callus formation requires the BIN2-ARF-LBD axis in Arabidopsis.
Planta, 2017. 246(4): p. 797-802
[PMID:28766014] - Jeon E, et al.
LBD14/ASL17 Positively Regulates Lateral Root Formation and is Involved in ABA Response for Root Architecture in Arabidopsis.
Plant Cell Physiol., 2017. 58(12): p. 2190-2201
[PMID:29040694] - Pandey SK,Kim J
Coiled-coil motif in LBD16 and LBD18 transcription factors are critical for dimerization and biological function in arabidopsis.
Plant Signal Behav, 2018. 13(1): p. e1411450
[PMID:29227192] - Xu C, et al.
Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
Nat Plants, 2018. 4(2): p. 108-115
[PMID:29358751] - Liu J, et al.
The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture.
Plant Cell Physiol., 2018. 59(4): p. 734-743
[PMID:29361138] - Lee HW, et al.
LBD16 and LBD18 acting downstream of ARF7 and ARF19 are involved in adventitious root formation in Arabidopsis.
BMC Plant Biol., 2019. 19(1): p. 46
[PMID:30704405]
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