PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa24726s010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | B3 | ||||||||
Protein Properties | Length: 68aa MW: 7991.09 Da PI: 9.9638 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 61.1 | 1.8e-19 | 2 | 68 | 1 | 63 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-T CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltk 63 f+kv tpsdv+k++rlv+pk++ae++ ++++e++ l +ed++g+sW+++++y+++s++yv+tk Csa24726s010.1 2 FDKVVTPSDVGKLNRLVIPKQHAERFfpldSSSNEKGLLLNFEDLTGKSWRFRYSYWNSSQSYVMTK 68 89****************************66677899***************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.26E-18 | 1 | 68 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.81E-14 | 1 | 68 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 1.7E-25 | 1 | 68 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.5E-16 | 2 | 68 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 68 aa Download sequence Send to blast |
MFDKVVTPSD VGKLNRLVIP KQHAERFFPL DSSSNEKGLL LNFEDLTGKS WRFRYSYWNS 60 SQSYVMTK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 5e-45 | 1 | 68 | 7 | 74 | B3 domain-containing transcription factor NGA1 |
5os9_B | 5e-45 | 1 | 68 | 7 | 74 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Regulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa24726s010.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC004411 | 2e-86 | AC004411.3 Arabidopsis thaliana chromosome 2 clone F14M4 map CIC06C03, complete sequence. | |||
GenBank | AC005310 | 2e-86 | AC005310.3 Arabidopsis thaliana chromosome 2 clone F19D11 map CIC06C03, complete sequence. | |||
GenBank | AK118045 | 2e-86 | AK118045.1 Arabidopsis thaliana At2g46870 mRNA for putative RAV-like B3 domain DNA binding protein, complete cds, clone: RAFL19-27-L04. | |||
GenBank | BT008534 | 2e-86 | BT008534.1 Arabidopsis thaliana clone U50690 putative RAV B3 domain DNA binding protein (At2g46870) mRNA, complete cds. | |||
GenBank | CP002685 | 2e-86 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. | |||
GenBank | FJ873731 | 2e-86 | FJ873731.1 Arabidopsis thaliana ecotype Landsberg erecta NGATHA1 (NGA1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006294618.1 | 2e-42 | B3 domain-containing transcription factor NGA1 | ||||
Swissprot | O82799 | 2e-43 | NGA1_ARATH; B3 domain-containing transcription factor NGA1 | ||||
TrEMBL | R0FXT0 | 4e-41 | R0FXT0_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.0050s0013.1.p | 7e-42 | (Capsella grandiflora) | ||||
STRING | XP_006294618.1 | 7e-42 | (Capsella rubella) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46870.1 | 8e-46 | B3 family protein |