PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa20g077960.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | WOX | ||||||||
Protein Properties | Length: 317aa MW: 35122.2 Da PI: 6.507 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.1 | 1.3e-17 | 55 | 115 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++++eq+++Le+ F++ +p +ee++++ +l ++ +++V++WFqNr+ + k+ Csa20g077960.1 55 KPRWNPKPEQIRILESIFNSgIVNPPREEIQRIRIRLqeygQIGDANVFYWFQNRKSRAKH 115 89*****************99*************************************995 PP | |||||||
2 | Wus_type_Homeobox | 110.8 | 7.6e-36 | 54 | 116 | 2 | 64 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +++RW+P+peQi+iLe++++sG+++P++eeiqri+ +L+eyG+i+d+NVfyWFQNrk+R ++k Csa20g077960.1 54 PKPRWNPKPEQIRILESIFNSGIVNPPREEIQRIRIRLQEYGQIGDANVFYWFQNRKSRAKHK 116 579**********************************************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.171 | 51 | 116 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 7.7E-12 | 53 | 118 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 4.7E-7 | 53 | 120 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.65E-8 | 54 | 116 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.5E-6 | 55 | 115 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 2.8E-15 | 55 | 115 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 317 aa Download sequence Send to blast |
MSSSSNKNWP SMFKSKPCNN NHHHHQHESG SSSYMHYSNC NISSSFSSDR VPDPKPRWNP 60 KPEQIRILES IFNSGIVNPP REEIQRIRIR LQEYGQIGDA NVFYWFQNRK SRAKHKLRVH 120 HKSPKTSKKD KIISPGIDAD HCFGLVNQET GFFPVQNNEM VVTQPAGYPS SVQNDLSVAQ 180 SGFGFGDFVV PVVMEEGVAF PENDESLDKI PAINFSGGDG NGGGDCFSPL PLTTNQSQER 240 AIVFHGGENV EDCVSPDKLT VFINDMLFKV AAGLFNVKEA FGNDAILINS FGQPILTDEN 300 GVTFHSLQNG AVYYLI* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor, which may be involved in embryonic patterning (PubMed:14711878). May be required for basal embryo development after fertilization (PubMed:14711878). Acts partially redundantly with STIP in promoting embryonic cell division and proliferation (PubMed:17706632). Promotes cotyledon boundary formation by maintaining the symmetry in CUC genes expression domains (PubMed:22827849). {ECO:0000269|PubMed:17706632, ECO:0000269|PubMed:22827849, ECO:0000303|PubMed:14711878}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa20g077960.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in the zygote after fertilization by the transcription factor WRKY2 (PubMed:21316593). Up-regulated by CLE8 (PubMed:22427333). {ECO:0000269|PubMed:21316593, ECO:0000269|PubMed:22427333}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY251400 | 0.0 | AY251400.1 Arabidopsis thaliana WOX8 protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010494755.1 | 0.0 | PREDICTED: WUSCHEL-related homeobox 8-like | ||||
Swissprot | Q6X7J5 | 1e-172 | WOX8_ARATH; WUSCHEL-related homeobox 8 | ||||
TrEMBL | R0EV12 | 0.0 | R0EV12_9BRAS; Uncharacterized protein | ||||
STRING | XP_010494755.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14262 | 16 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G45980.1 | 1e-138 | WUSCHEL related homeobox 8 |
Publications ? help Back to Top | |||
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