PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa20g077960.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

WOX

Protein Properties

Length: 317aa MW: 35122.2 Da PI: 6.507

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa20g077960.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.1	1.3e-17	55	115	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++++eq+++Le+ F++ +p +ee++++ +l ++ +++V++WFqNr+ + k+ Csa20g077960.1 55 KPRWNPKPEQIRILESIFNSgIVNPPREEIQRIRIRLqeygQIGDANVFYWFQNRKSRAKH 115 89***************99***********************************995 PP
2	Wus_type_Homeobox	110.8	7.6e-36	54	116	2	64
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +++RW+P+peQi+iLe++++sG+++P++eeiqri+ +L+eyG+i+d+NVfyWFQNrk+R ++k Csa20g077960.1 54 PKPRWNPKPEQIRILESIFNSGIVNPPREEIQRIRIRLQEYGQIGDANVFYWFQNRKSRAKHK 116 579**********************************************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	10.171	51	116	IPR001356	Homeobox domain
SuperFamily	SSF46689	7.7E-12	53	118	IPR009057	Homeodomain-like
SMART	SM00389	4.7E-7	53	120	IPR001356	Homeobox domain
CDD	cd00086	6.65E-8	54	116	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.5E-6	55	115	IPR009057	Homeodomain-like
Pfam	PF00046	2.8E-15	55	115	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MSSSSNKNWP SMFKSKPCNN NHHHHQHESG SSSYMHYSNC NISSSFSSDR VPDPKPRWNP 60 KPEQIRILES IFNSGIVNPP REEIQRIRIR LQEYGQIGDA NVFYWFQNRK SRAKHKLRVH 120 HKSPKTSKKD KIISPGIDAD HCFGLVNQET GFFPVQNNEM VVTQPAGYPS SVQNDLSVAQ 180 SGFGFGDFVV PVVMEEGVAF PENDESLDKI PAINFSGGDG NGGGDCFSPL PLTTNQSQER 240 AIVFHGGENV EDCVSPDKLT VFINDMLFKV AAGLFNVKEA FGNDAILINS FGQPILTDEN 300 GVTFHSLQNG AVYYLI*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor, which may be involved in embryonic patterning (PubMed:14711878). May be required for basal embryo development after fertilization (PubMed:14711878). Acts partially redundantly with STIP in promoting embryonic cell division and proliferation (PubMed:17706632). Promotes cotyledon boundary formation by maintaining the symmetry in CUC genes expression domains (PubMed:22827849). {ECO:0000269\|PubMed:17706632, ECO:0000269\|PubMed:22827849, ECO:0000303\|PubMed:14711878}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa20g077960.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in the zygote after fertilization by the transcription factor WRKY2 (PubMed:21316593). Up-regulated by CLE8 (PubMed:22427333). {ECO:0000269\|PubMed:21316593, ECO:0000269\|PubMed:22427333}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY251400	0.0	AY251400.1 Arabidopsis thaliana WOX8 protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010494755.1	0.0	PREDICTED: WUSCHEL-related homeobox 8-like
Swissprot	Q6X7J5	1e-172	WOX8_ARATH; WUSCHEL-related homeobox 8
TrEMBL	R0EV12	0.0	R0EV12_9BRAS; Uncharacterized protein
STRING	XP_010494755.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14262	16	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45980.1	1e-138	WUSCHEL related homeobox 8

Publications ? help Back to Top
Xiao W, et al. DNA methylation is critical for Arabidopsis embryogenesis and seed viability. Plant Cell, 2006. 18(4): p. 805-14 [PMID:16531498] Wang W, et al. Dwarf Tiller1, a Wuschel-related homeobox transcription factor, is required for tiller growth in rice. PLoS Genet., 2014. 10(3): p. e1004154 [PMID:24625559] Zhu T,Moschou PN,Alvarez JM,Sohlberg JJ,von Arnold S Wuschel-related homeobox 8/9 is important for proper embryo patterning in the gymnosperm Norway spruce. J. Exp. Bot., 2014. 65(22): p. 6543-52 [PMID:25205582] Ueda M, et al. Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote. Genes Dev., 2017. 31(6): p. 617-627 [PMID:28404632]