PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g077570.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HSF
Protein Properties Length: 344aa    MW: 39564.7 Da    PI: 5.1152
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g077570.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.74.3e-34151062102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+ye+++d++ ++++swsen++sf+v+++ ef++++Lp++Fkh+nf+SF+RQLn+YgF+kv+ e+         weF+++ F +g+  l+++
  Csa20g077570.1  15 FLTKTYEMVDDDSSDSVVSWSENNKSFIVKNPAEFSRDLLPRFFKHKNFSSFIRQLNTYGFRKVDPEK---------WEFSNEDFVRGRPYLMKN 100
                     9****************************************************************999.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i+r+k 
  Csa20g077570.1 101 IHRRKP 106
                     ***985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467855.85E-3410104IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.5E-5811104IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.108.2E-3712104IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000565.2E-191538IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.5E-3015104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.2E-195365IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405478IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.2E-196678IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MDESSHGSSS SLPPFLTKTY EMVDDDSSDS VVSWSENNKS FIVKNPAEFS RDLLPRFFKH  60
KNFSSFIRQL NTYGFRKVDP EKWEFSNEDF VRGRPYLMKN IHRRKPVHSH SLVNLQTQNP  120
LTEAERRSME DQIERLKREK EDLLVELQSQ EQERKDFEMQ VTTLKDRLQQ MEQHQKSIVA  180
YVSQVLGKPG LSLNLENHER RKRRVPESSL PSSRSHVEQV ENLESSLTFW ENLVSESYEK  240
SGVQSSSSMD LDAAESSLSI GDTRPKSSKI DMNLEPPVTV SVAVAPKAGV NDDFWEQCLT  300
ENPGSTEQQE VQSERKDVDN DNGNQRTFWW NSGNVNNNIT EKT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B6e-22810422129Heat shock factor protein 1
5d5v_B6e-22810422129Heat shock factor protein 1
5d5v_D6e-22810422129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). May be involved in general response to auxin. {ECO:0000269|PubMed:18381353}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g077570.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat and cold stresses and the herbicide 2,4-dichlorophenoxyacetic acid (2,4-D, auxin analog). {ECO:0000269|PubMed:18381353}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2290580.0AK229058.1 Arabidopsis thaliana mRNA for heat shock transcription factor, complete cds, clone: RAFL16-34-M14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010494690.10.0PREDICTED: heat stress transcription factor A-4c-like
RefseqXP_010494691.10.0PREDICTED: heat stress transcription factor A-4c-like
RefseqXP_010494692.10.0PREDICTED: heat stress transcription factor A-4c-like
RefseqXP_010494693.10.0PREDICTED: heat stress transcription factor A-4c-like
RefseqXP_010494694.10.0PREDICTED: heat stress transcription factor A-4c-like
SwissprotQ9FK720.0HFA4C_ARATH; Heat stress transcription factor A-4c
TrEMBLR0GR490.0R0GR49_9BRAS; Uncharacterized protein
STRINGXP_010494690.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28532868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45710.10.0HSF family protein
Publications ? help Back to Top
  1. Faragó D,Sass L,Valkai I,Andrási N,Szabados L
    PlantSize Offers an Affordable, Non-destructive Method to Measure Plant Size and Color in Vitro.
    Front Plant Sci, 2018. 9: p. 219
    [PMID:29520290]