![PlantTFDB](images/title_pic.jpg) |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Csa20g071190.2 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
Family |
C2H2 |
Protein Properties |
Length: 454aa MW: 49375.1 Da PI: 8.3158 |
Description |
C2H2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Csa20g071190.2 | genome | CSGP | View CDS |
|
Signature Domain? help Back to Top |
![Signature Domain](draw_signature_domain.php?sp=Cas&pid=Csa20g071190.2) |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-C2H2 | 15.8 | 4e-05 | 68 | 88 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23
C++Cgk F r nL+ H r H
Csa20g071190.2 68 CEICGKGFQRDQNLQLHRRGH 88
*******************88 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0010150 | Biological Process | leaf senescence |
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase |
GO:0048573 | Biological Process | photoperiodism, flowering |
GO:0003676 | Molecular Function | nucleic acid binding |
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
Protein Sequence Length: 454 aa
Download sequence Send
to blast |
MTTGEVLQTI SSGSGFAQSS STTLDHDESL INPPLVKKKR NLPGNPDPEA EVIALSPKTL 60 MATNRFLCEI CGKGFQRDQN LQLHRRGHNL PWKLKQRTSK EVRKRVYVCP EKTCVHHHSS 120 RALGDLTGIK KHFCRKHGEK KWKCDKCAKR YAVQSDCKAH SKTCGTRERD SFITHRAFCD 180 ALAEETAKIN AASHLNGLAA AGAAGSVNVN YQYLMGTLIP PLQPFVPLPQ TNQNHHHQHF 240 QPPPASSSSL SIWMGQDIAP PQPQNYDWVF GNAKATSPCI DNNNNHDELI TQTANASSTT 300 TLSVPSLFSN DQSQNANANA NANMSATALL QKAAEIGASS TTTAATNDPS TFLHSFPLKS 360 SDQTATYDGG EKFFALFGSN NNIGLMSHSL DQETENVRND VTVASPMDEL QNYPWKRRRV 420 DGGAEGGGGG QTRDFLGVGV QTLCHPSSIN GWI*
|
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Transcription activator that binds to the DNA sequence 5'-CTTTTGTCC-3' (PubMed:21265895, PubMed:25929516). Regulates photoperiodic flowering by modulating sugar transport and metabolism (PubMed:21265895, PubMed:25929516). Regulates SUS1 and SUS4 (PubMed:21265895). Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:25829440). {ECO:0000269|PubMed:21265895, ECO:0000269|PubMed:25829440, ECO:0000269|PubMed:25929516}. |
Regulation -- Description ? help
Back to Top |
Source |
Description |
UniProt | INDUCTION: Up-regulated by 'SHORT-ROOT' (SHR)(PubMed:16640459). Strongly down-regulated by sugar deprivation, but not regulated by day-length. {ECO:0000269|PubMed:16640459}. |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AB005239 | 0.0 | AB005239.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MLN1. |
GenBank | AY037202 | 0.0 | AY037202.1 Arabidopsis thaliana AT5g44160/MLN1_8 mRNA, complete cds. |
GenBank | BT002685 | 0.0 | BT002685.1 Arabidopsis thaliana At5g44160/MLN1_8 gene, complete cds. |
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |