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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Csa20g071190.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
| Family |
C2H2 |
| Protein Properties |
Length: 465aa MW: 50677.6 Da PI: 8.3363 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Csa20g071190.1 | genome | CSGP | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 15.7 | 4.1e-05 | 68 | 88 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23
C++Cgk F r nL+ H r H
Csa20g071190.1 68 CEICGKGFQRDQNLQLHRRGH 88
*******************88 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0010150 | Biological Process | leaf senescence |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase |
| GO:0048573 | Biological Process | photoperiodism, flowering |
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0046872 | Molecular Function | metal ion binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 465 aa
Download sequence Send
to blast |
MTTGEVLQTI SSGSGFAQSS STTLDHDESL INPPLVKKKR NLPGNPDPEA EVIALSPKTL 60
MATNRFLCEI CGKGFQRDQN LQLHRRGHNL PWKLKQRTSK EVRKRVYVCP EKTCVHHHSS 120
RALGDLTGIK KHFCRKHGEK KWKCDKCAKR YAVQSDCKAH SKTCGTREYR CDCGTIFSRR 180
DSFITHRAFC DALAEETAKI NAASHLNGLA AAGAAGSVNV NYQYLMGTLI PPLQPFVPLP 240
QTNQNHHHQH FQPPPASSSS LSIWMGQDIA PPQPQNYDWV FGNAKATSPC IDNNNNHDEL 300
ITQTANASST TTLSVPSLFS NDQSQNANAN ANANMSATAL LQKAAEIGAS STTTAATNDP 360
STFLHSFPLK SSDQTATYDG GEKFFALFGS NNNIGLMSHS LDQETENVRN DVTVASPMDE 420
LQNYPWKRRR VDGGAEGGGG GQTRDFLGVG VQTLCHPSSI NGWI*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds to the DNA sequence 5'-CTTTTGTCC-3' (PubMed:21265895, PubMed:25929516). Regulates photoperiodic flowering by modulating sugar transport and metabolism (PubMed:21265895, PubMed:25929516). Regulates SUS1 and SUS4 (PubMed:21265895). Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:25829440). {ECO:0000269|PubMed:21265895, ECO:0000269|PubMed:25829440, ECO:0000269|PubMed:25929516}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Up-regulated by 'SHORT-ROOT' (SHR)(PubMed:16640459). Strongly down-regulated by sugar deprivation, but not regulated by day-length. {ECO:0000269|PubMed:16640459}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AY037202 | 0.0 | AY037202.1 Arabidopsis thaliana AT5g44160/MLN1_8 mRNA, complete cds. |
| GenBank | BT002685 | 0.0 | BT002685.1 Arabidopsis thaliana At5g44160/MLN1_8 gene, complete cds. |
