PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g067060.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 294aa    MW: 31420.3 Da    PI: 9.432
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g067060.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.16.8e-057496123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ykC+ C+k+Fs+   L  H  +H
  Csa20g067060.1 74 YKCGVCDKTFSSYQALGGHKASH 96
                    9***********99999998887 PP
2zf-C2H215.16.8e-05170192123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ykC+ C+k+Fs+   L  H  +H
  Csa20g067060.1 170 YKCGVCDKTFSSYQALGGHKASH 192
                     9***********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139123.0E-127498IPR007087Zinc finger, C2H2
SuperFamilySSF576672.49E-874140No hitNo description
Gene3DG3DSA:3.30.160.609.9E-47496IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0147496IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.8477496IPR007087Zinc finger, C2H2
PROSITE patternPS0002807696IPR007087Zinc finger, C2H2
PfamPF139129.1E-12118142IPR007087Zinc finger, C2H2
PROSITE profilePS501579.016118140IPR007087Zinc finger, C2H2
SMARTSM003550.88118140IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280120140IPR007087Zinc finger, C2H2
PfamPF139123.0E-12170194IPR007087Zinc finger, C2H2
PROSITE profilePS501579.847170192IPR007087Zinc finger, C2H2
SuperFamilySSF576672.58E-8170236No hitNo description
Gene3DG3DSA:3.30.160.609.9E-4170192IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.014170192IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280172192IPR007087Zinc finger, C2H2
PfamPF139129.1E-12214238IPR007087Zinc finger, C2H2
PROSITE profilePS501579.016214236IPR007087Zinc finger, C2H2
SMARTSM003550.88214236IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280216236IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MALEALNSPR LVEDSTRFHG FEQWTRGKKR SKRSRSGHDD HDLTEEEYLA FCLMLLARDR  60
GDLDTVTAAK KPDYKCGVCD KTFSSYQALG GHKASHRSLI GGGDKDKSMA VSAAVKSHVC  120
SICLKSFATG QALGGHKRCH YEGNGNGGVL NSEGPLLKKR XVTAAKKPDY KCGVCDKTFS  180
SYQALGGHKA SHRSLIGGGD KDKSMAVSAA VKSHVCSICL KSFATGQALG GHKRCHYEGN  240
GNGGVLNSEG VGSTSHVSSN SHRGFDLNIR QVREISPDDE VMSPMAAKKP CLK*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor probably involved in abiotic stress responses. Binds DNA in a sequence-specific manner and can repress the transactivation activity of other transcription factors. {ECO:0000269|PubMed:15333755}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g067060.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), ethylene, salt, cold and heat. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010494287.11e-109PREDICTED: zinc finger protein AZF3-like
RefseqXP_019097609.11e-109PREDICTED: zinc finger protein AZF3-like
SwissprotQ9SSW02e-77AZF3_ARATH; Zinc finger protein AZF3
TrEMBLR0GT271e-83R0GT27_9BRAS; Uncharacterized protein
STRINGXP_010494287.11e-108(Camelina sativa)
STRINGXP_010494288.11e-108(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12112898
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43170.16e-70zinc-finger protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]