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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa20g066430.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | B3 | ||||||||
Protein Properties | Length: 214aa MW: 24141.7 Da PI: 10.2057 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 53.3 | 4.9e-17 | 114 | 203 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k +++s+v+ +l lp +f+++h gk+ + +tl de+g ++e + k+ + l++GW +F+ a++L gD++vF+l++ + f +v Csa20g066430.1 114 FVKSMLQSHVSGGFWLGLPVQFCRSHLGKHDG--VITLIDEEGAEYETIY--LAKRTG--LSGGWMGFAIAHNLAYGDTLVFELVRPTAF--KVY 200 89************************666544..7***************..555544..************************997888..666 PP EE- CS B3 96 vfr 98 v+r Csa20g066430.1 201 VIR 203 665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.16E-24 | 108 | 204 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.3E-19 | 109 | 203 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.74E-26 | 112 | 203 | No hit | No description |
PROSITE profile | PS50863 | 12.111 | 114 | 205 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.8E-14 | 114 | 203 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.1E-24 | 114 | 205 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MVVAKQSNYE EFRLKRVEEN KKRMEALNLP KLSRNLNPTS LKTSPMKKRC IPRTPEKAEK 60 QMVIVRRSSR LSNSSSTPVY REVDLQRVQN RRRDEAIARA EKFQADLGSD YPSFVKSMLQ 120 SHVSGGFWLG LPVQFCRSHL GKHDGVITLI DEEGAEYETI YLAKRTGLSG GWMGFAIAHN 180 LAYGDTLVFE LVRPTAFKVY VIRVGSSGES SEI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa20g066430.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB007647 | 7e-71 | AB007647.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MJB21. | |||
GenBank | CP002688 | 7e-71 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010495620.1 | 1e-145 | PREDICTED: B3 domain-containing protein At5g42700-like | ||||
Swissprot | Q9FMZ4 | 1e-108 | Y5270_ARATH; B3 domain-containing protein At5g42700 | ||||
TrEMBL | A0A2H1ZE86 | 1e-112 | A0A2H1ZE86_ARATH; AP2/B3-like transcriptional factor family protein | ||||
STRING | XP_010495620.1 | 1e-145 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3744 | 27 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42700.1 | 1e-108 | B3 family protein |
Publications ? help Back to Top | |||
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