PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g057530.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family FAR1
Protein Properties Length: 762aa    MW: 87218.8 Da    PI: 7.5836
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g057530.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR177.91.9e-24148240190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek....dgkwevtkleleHnHela 90 
                     ++Y+++A++ GFs+rk++s++s++ g +++r+fvC+++g+++++kk+++++ r+r++ r+gC+ak+ ++ke     +  w+v+++++ HnHel 
  Csa20g057530.1 148 EYYSAFARKSGFSIRKARSTESQNLG-VYRRDFVCYRSGFNQPRKKANVEHPRERKSVRCGCDAKMYLTKEVvdgvSRCWYVSQFSNVHNHELL 240
                     69********************8888.*******************************************988677788*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.7E-22148240IPR004330FAR1 DNA binding domain
PfamPF105515.5E-22372465IPR018289MULE transposase domain
PROSITE profilePS509669.47631679IPR007527Zinc finger, SWIM-type
PfamPF044343.2E-7651678IPR007527Zinc finger, SWIM-type
SMARTSM005751.1E-6654681IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 762 aa     Download sequence    Send to blast
MAFVKKLKFE TTRQRVVVSP TTTIKRNRRR SNSLATFLSQ LKFSIVRSSS RVSELGLQTR  60
RKLDISNLLL KSVNEMSLNN IWIRRQQCPC GDWKCYIRFE GDESSCLVTK SELDSSTTTT  120
GTGSSLYDNT VFMPYVGQIF RTDDEAFEYY SAFARKSGFS IRKARSTESQ NLGVYRRDFV  180
CYRSGFNQPR KKANVEHPRE RKSVRCGCDA KMYLTKEVVD GVSRCWYVSQ FSNVHNHELL  240
EDDQVRLLPA YRKIQQSDQD RILLLSKAGF PVNRIVKLLE LEKGVHAGQL PFIEKDVRNF  300
VRACKKSVQE NDAFLCEKRE SDTLELLESC KALAERDMGF AYDCTSDENQ KVENLAWAFG  360
DSVGAYSLFG DVVVFDTTYR SIPYGLLLGV FFGIDNNGKA ILLGCVLLQD ESCLSFTWAL  420
QTFVRFMRGR HPQTFLTDMD AGLKDAIARE MPNTHHVVFM WHIVSKLASW FSQTLGSHYD  480
EFRAGFEMFC RAGNIDEFEQ QWNLLVTRFG LVQDRHAALL YSCRASWSPC YIREHFVAQT  540
MTPEFNLSID SFLKRIVAGP TCMQLLLEEV SAAASLAKQI PPRFTYPSLK TCMPMEDQAR  600
GILTPYAFSI LQNELVLSVQ YAVSEMANGP YIVHHFKKME GECCVIWNPE NEEIQCSCKE  660
FEHSGILCRH TLRVLTVKNC FLIPEQYFLL RWRQECPHVA AENQNGQGIG DDCAQTFHSL  720
TETLLTESMI CKDRLDYANQ ELSLLIDRVR NVAPANCLYQ P*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g057530.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankT26D30.0AF262043.1 Arabidopsis thaliana BAC T26D3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010494097.10.0PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
SwissprotQ9LKR40.0FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBLR0FDR20.0R0FDR2_9BRAS; Uncharacterized protein
STRINGXP_010494097.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17652674
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.10.0FAR1-related sequence 10
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]