PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa20g057280.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | GeBP | ||||||||
Protein Properties | Length: 427aa MW: 46415.9 Da PI: 4.7404 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 118.3 | 4.1e-37 | 122 | 220 | 2 | 98 |
DUF573 2 lfqrlwseeDeivlLqGlidf.kaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskk 94 lfqrlw++eDei lL+G++d+ ++++g s+++ d+ fye++k++++++++k+qlveK+rrLKkK+++ ++k++sgke+ f+++hdq +f++s+k Csa20g057280.1 122 LFQRLWTDEDEIELLRGFLDYiTSHRGYSSHSpDTAPFYEQIKSKLQLEFNKNQLVEKLRRLKKKYRNVMSKISSGKEVFFKSPHDQATFDISRK 216 79*******************9999***88888************************************************************** PP DUF573 95 iWgs 98 iW++ Csa20g057280.1 217 IWNQ 220 **85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 1.1E-33 | 123 | 219 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 427 aa Download sequence Send to blast |
MASDQRDTVF SVESPDLEDG GGGSGGGGGE TESDEDVVLP EPNEAEDDDP EYEDLNSPSM 60 VSAISTAPAA AKSSSSTGTV TVALPAGSAV PVASIPSDSD QKWHRMTEIV HQRPPIDDSR 120 RLFQRLWTDE DEIELLRGFL DYITSHRGYS SHSPDTAPFY EQIKSKLQLE FNKNQLVEKL 180 RRLKKKYRNV MSKISSGKEV FFKSPHDQAT FDISRKIWNQ TGKIIGFEDN SVMDFEETNH 240 VNNTNGSSSF NISIGNANAD VVDLENGLEK KVTMSRKRSR SRIGKIDEDK PILAPCEMPP 300 NAVNLNENVA AVGEFSDGKS LGGLIEETVK NCVSPMIKEM MNGTTGMMMA AMGGFPGGGA 360 HALGALSPML IPSMNLGFGG KGAGDQRWRR QQILELEVYS RRLELVQEQI RATVNELKTL 420 PNGGGG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 276 | 281 | KRSRSR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa20g057280.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010494072.1 | 0.0 | PREDICTED: probable transcription factor At5g28040 | ||||
Swissprot | F4K5T4 | 0.0 | STKLU_ARATH; Probable transcription factor At5g28040 | ||||
TrEMBL | R0H766 | 0.0 | R0H766_9BRAS; Uncharacterized protein | ||||
STRING | XP_010494072.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3098 | 27 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28040.1 | 0.0 | DNA-binding storekeeper protein-related transcriptional regulator |
Publications ? help Back to Top | |||
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