PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g057280.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GeBP
Protein Properties Length: 427aa    MW: 46415.9 Da    PI: 4.7404
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g057280.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573118.34.1e-37122220298
          DUF573   2 lfqrlwseeDeivlLqGlidf.kaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskk 94 
                     lfqrlw++eDei lL+G++d+ ++++g s+++ d+  fye++k++++++++k+qlveK+rrLKkK+++ ++k++sgke+ f+++hdq +f++s+k
  Csa20g057280.1 122 LFQRLWTDEDEIELLRGFLDYiTSHRGYSSHSpDTAPFYEQIKSKLQLEFNKNQLVEKLRRLKKKYRNVMSKISSGKEVFFKSPHDQATFDISRK 216
                     79*******************9999***88888************************************************************** PP

          DUF573  95 iWgs 98 
                     iW++
  Csa20g057280.1 217 IWNQ 220
                     **85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.1E-33123219IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MASDQRDTVF SVESPDLEDG GGGSGGGGGE TESDEDVVLP EPNEAEDDDP EYEDLNSPSM  60
VSAISTAPAA AKSSSSTGTV TVALPAGSAV PVASIPSDSD QKWHRMTEIV HQRPPIDDSR  120
RLFQRLWTDE DEIELLRGFL DYITSHRGYS SHSPDTAPFY EQIKSKLQLE FNKNQLVEKL  180
RRLKKKYRNV MSKISSGKEV FFKSPHDQAT FDISRKIWNQ TGKIIGFEDN SVMDFEETNH  240
VNNTNGSSSF NISIGNANAD VVDLENGLEK KVTMSRKRSR SRIGKIDEDK PILAPCEMPP  300
NAVNLNENVA AVGEFSDGKS LGGLIEETVK NCVSPMIKEM MNGTTGMMMA AMGGFPGGGA  360
HALGALSPML IPSMNLGFGG KGAGDQRWRR QQILELEVYS RRLELVQEQI RATVNELKTL  420
PNGGGG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1276281KRSRSR
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g057280.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010494072.10.0PREDICTED: probable transcription factor At5g28040
SwissprotF4K5T40.0STKLU_ARATH; Probable transcription factor At5g28040
TrEMBLR0H7660.0R0H766_9BRAS; Uncharacterized protein
STRINGXP_010494072.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30982764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.10.0DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. García-Cano E,Hak H,Magori S,Lazarowitz SG,Citovsky V
    The Agrobacterium F-Box Protein Effector VirF Destabilizes the Arabidopsis GLABROUS1 Enhancer/Binding Protein-Like Transcription Factor VFP4, a Transcriptional Activator of Defense Response Genes.
    Mol. Plant Microbe Interact., 2018. 31(5): p. 576-586
    [PMID:29264953]