PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g048500.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family TALE
Protein Properties Length: 390aa    MW: 42606.4 Da    PI: 6.2406
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g048500.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.68.8e-083383712154
                     HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     k +yp++e++++L +++gL+ +q+ +WF N+R +
  Csa20g048500.1 338 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 371
                     469*****************************87 PP
2ELK292.5e-10292313122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     ELKh+L+++Y+++++++++E++
  Csa20g048500.1 292 ELKHELKQGYKEKIVDIREEIL 313
                     9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.6E-19127171IPR005540KNOX1
PfamPF037909.9E-18130170IPR005540KNOX1
SMARTSM012562.5E-29183238IPR005541KNOX2
PfamPF037912.4E-21187237IPR005541KNOX2
PfamPF037898.9E-7292313IPR005539ELK domain
PROSITE profilePS512139.969292312IPR005539ELK domain
SMARTSM011886.1E-4292313IPR005539ELK domain
PROSITE profilePS5007111.726312375IPR001356Homeobox domain
SuperFamilySSF466894.11E-16314378IPR009057Homeodomain-like
SMARTSM003892.4E-11314379IPR001356Homeobox domain
CDDcd000866.59E-12315376No hitNo description
Gene3DG3DSA:1.10.10.603.1E-25319376IPR009057Homeodomain-like
PfamPF059201.1E-17332371IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
QHFQEAPPPN WLNSALLRSS DNNGNNNFLN LHTATANTTT ASSSDSPSSA AVAANQWLSR  60
SSSFLQRNNN NNATASAVVG DGIDDVTGGG GGAETMIGGE MKGGGGDNKN DGGGAAAVDG  120
VVSWQNARHK AEILSHPLYE QLLSAHVACL RIATPVDQLP RIDAQLAQSQ HVVAKYSALG  180
AAAQGLVGDD KELDQFMTHY VLLLCSFKEQ LQQHVRVHAM EAVMACWEIE QSLQSLTGVS  240
PGEGMGATMS DDEDEQVESD VNMFDGSLDV LGFGPLVPTE SERSLMERVR QELKHELKQG  300
YKEKIVDIRE EILRKRRAGK LPGDTTSVLK AWWQSHSKWP YPTEEDKARL VQETGLQLKQ  360
INNWFINQRK RNWHSNPSSS TVLKNKRKR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A1e-12315379872Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1368388RKRNWHSNPSSSTVLKNKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g048500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1207620.0AY120762.1 Arabidopsis thaliana KNAT3 homeodomain protein (At5g25220) mRNA, complete cds.
GenBankX923920.0X92392.1 A.thaliana mRNA for KNAT3 homeobox protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010493771.20.0PREDICTED: homeobox protein knotted-1-like 3 isoform X2
SwissprotP480000.0KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLR0FEQ80.0R0FEQ8_9BRAS; Uncharacterized protein
STRINGXP_006287805.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44428158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.20.0KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]