PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Csa20g046330.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

C2H2

Protein Properties

Length: 666aa MW: 75116.7 Da PI: 9.8108

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa20g046330.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.12E-6	491	523	No hit	No description
PROSITE profile	PS50157	11.635	496	523	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	498	518	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 666 aa Download sequence Send to blast
MYRDRDLRSQ EKRRFERKVG FDNGDIVKVT LAYKVLFRYC FTCKRISHEE RTCPLLSDAD 60 REKNRRLRAE EYAHTDEFRS RFAQPKGQDL LLTGRDKAEV RKGEGDSEDS IRRSSERWSS 120 REEAHQGKES RNRNIWQRLE DPRNVNYPRY RERYHPYGKT DGQVKEIAEA LDSQRTISDN 180 NDGFYRPYSD ARPSDHRRGY RSRTNTSLKG KDAVYYRPKT KDLPGPSGGI STARLNPTTI 240 TESTNEALVL PPPPVVRDVT PTKVNEATGS KPPGDEMAAT RDSPRNDYIT EEPMEVDVYL 300 QEVGLLKDGV LVNAQPEDGA EQIEAISQLS PVKKTQQRLE LGQNQAKGKD KERLKSRPSK 360 VPSAGRGSKS SKDLAKDAKS PRRRSPRGPE IKGIATRKTN ALRGRSPSKK APTTVTHTKT 420 LSVPRCALMD ASIVSFSETF PNQDSLNQSL EQRTKDEEKD VHDSSQEQLN QELDLIDCID 480 TTSNVKGTTS TEQKLFSCNY CQRTFYSSQA LGGHQNAHKR ERTLAKRGQR LAASASAFGH 540 PYSFSPLPIH GQYNSRLLGI QAHSMSHKVS SYNGFGGHYG QLNWSRLPFD QQPAIGKLPT 600 TENFHHHHHQ MMMMAPSLPN NIGRSSSNIG RILEGTPALE QWCGDGGLLS TNHEEQQKLD 660 LSLKL*

Sequence ? help Back to Top

Protein Sequence Length: 666 aa Download sequence Send to blast

MYRDRDLRSQ EKRRFERKVG FDNGDIVKVT LAYKVLFRYC FTCKRISHEE RTCPLLSDAD  60
REKNRRLRAE EYAHTDEFRS RFAQPKGQDL LLTGRDKAEV RKGEGDSEDS IRRSSERWSS  120
REEAHQGKES RNRNIWQRLE DPRNVNYPRY RERYHPYGKT DGQVKEIAEA LDSQRTISDN  180
NDGFYRPYSD ARPSDHRRGY RSRTNTSLKG KDAVYYRPKT KDLPGPSGGI STARLNPTTI  240
TESTNEALVL PPPPVVRDVT PTKVNEATGS KPPGDEMAAT RDSPRNDYIT EEPMEVDVYL  300
QEVGLLKDGV LVNAQPEDGA EQIEAISQLS PVKKTQQRLE LGQNQAKGKD KERLKSRPSK  360
VPSAGRGSKS SKDLAKDAKS PRRRSPRGPE IKGIATRKTN ALRGRSPSKK APTTVTHTKT  420
LSVPRCALMD ASIVSFSETF PNQDSLNQSL EQRTKDEEKD VHDSSQEQLN QELDLIDCID  480
TTSNVKGTTS TEQKLFSCNY CQRTFYSSQA LGGHQNAHKR ERTLAKRGQR LAASASAFGH  540
PYSFSPLPIH GQYNSRLLGI QAHSMSHKVS SYNGFGGHYG QLNWSRLPFD QQPAIGKLPT  600
TENFHHHHHQ MMMMAPSLPN NIGRSSSNIG RILEGTPALE QWCGDGGLLS TNHEEQQKLD  660
LSLKL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa20g046330.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC006259	1e-154	AC006259.1 Arabidopsis thaliana BAC F21J6 from chromosome V, containing KNAT3 and mapping near 60.5 cM, complete sequence.
GenBank	AK227706	1e-154	AK227706.1 Arabidopsis thaliana mRNA for ZFP3 zinc finger protein, complete cds, clone: RAFL14-29-I08.
GenBank	ATHZFPC	1e-154	L39646.1 Arabidopsis thaliana zinc finger protein (ZFP3) mRNA, complete cds.
GenBank	BT008308	1e-154	BT008308.1 Arabidopsis thaliana At5g25160 gene, complete cds.
GenBank	CP002688	1e-154	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1893	27	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25160.1	1e-116	zinc finger protein 3