PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa20g041500.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bHLH

Protein Properties

Length: 507aa MW: 55621.6 Da PI: 6.2524

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa20g041500.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26	1.7e-08	322	369	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Csa20g041500.1 322 SHSLAERVRREKIGERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 369 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.31E-8	316	373	No hit	No description
SuperFamily	SSF47459	2.88E-16	316	382	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.4E-16	318	383	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.37	318	368	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.1E-5	322	369	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.7E-10	324	374	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 507 aa Download sequence Send to blast
MENELFMNTE FPPPSEFEPP SSSSAMMLNW ALMDPNPQQD SSFLWEKSTD QQQQQQQQSI 60 FDSALSSLVS SPTPSNSNFS GGCGGGGGGG GDGFIIRELI GKLGNIGNHN SSGEIYGGTT 120 PMSRSASCYA TPMSSPPPPS NSNSHMMMNR TTPLTEFSAD PGFAERAARF SCFGSRSFNG 180 RTNSNLPVNN NNVVNNSGKL TRVSSTPALK ALVSPEVAPM IPGGEFSRKR KALPKGKSKE 240 NPISTASPSP SFSKTAEKKE DWSGKGSKSS EEKGGKRRRE DEEDDDVEEE EGEGNKNNNT 300 KPPEPPKDYI HVRARRGQAT DSHSLAERVR REKIGERMKL LQDLVPGCNK VTGKALMLDE 360 IINYVQSLQR QVEFLSMKLS SVNDTRLEFN VDALVSKDVM IPSSNNRLHE EGLQSKSSSH 420 HHQQLNIYNN NNNSQLHPNN MMLQSPMNSL ETSSLARSFT HLPTLNQFTD SISQYQMFSE 480 EDLQSIVGMG VAQNPNHESQ HMKLEL*

Sequence ? help Back to Top

Protein Sequence Length: 507 aa Download sequence Send to blast

MENELFMNTE FPPPSEFEPP SSSSAMMLNW ALMDPNPQQD SSFLWEKSTD QQQQQQQQSI  60
FDSALSSLVS SPTPSNSNFS GGCGGGGGGG GDGFIIRELI GKLGNIGNHN SSGEIYGGTT  120
PMSRSASCYA TPMSSPPPPS NSNSHMMMNR TTPLTEFSAD PGFAERAARF SCFGSRSFNG  180
RTNSNLPVNN NNVVNNSGKL TRVSSTPALK ALVSPEVAPM IPGGEFSRKR KALPKGKSKE  240
NPISTASPSP SFSKTAEKKE DWSGKGSKSS EEKGGKRRRE DEEDDDVEEE EGEGNKNNNT  300
KPPEPPKDYI HVRARRGQAT DSHSLAERVR REKIGERMKL LQDLVPGCNK VTGKALMLDE  360
IINYVQSLQR QVEFLSMKLS SVNDTRLEFN VDALVSKDVM IPSSNNRLHE EGLQSKSSSH  420
HHQQLNIYNN NNNSQLHPNN MMLQSPMNSL ETSSLARSFT HLPTLNQFTD SISQYQMFSE  480
EDLQSIVGMG VAQNPNHESQ HMKLEL*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds DNA to G box 5'-CACGTG-3' and to E-box 5'-CANNTG-3' (By similarity). Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000250\|UniProtKB:Q8GY61, ECO:0000269\|PubMed:24130508}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa20g041500.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT002945	0.0	BT002945.1 Arabidopsis thaliana clone RAFL14-96-A17 (R20245) unknown protein (At5g48560) mRNA, complete cds.
GenBank	BT005637	0.0	BT005637.1 Arabidopsis thaliana clone U20245 unknown protein (At5g48560) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010493685.1	0.0	PREDICTED: transcription factor bHLH78
Swissprot	Q9FJL4	0.0	BH078_ARATH; Transcription factor bHLH78
TrEMBL	D7MM36	0.0	D7MM36_ARALL; Uncharacterized protein
STRING	XP_010493685.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2332	27	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48560.1	0.0	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]