PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g038680.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 409aa    MW: 45401.8 Da    PI: 9.7535
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g038680.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.94.8e-081258347
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                      W+ ++d  +  a + +  +   +W++Ia+ ++ g+t  +++++++++
   Csa20g038680.1 12 YWSRDDDIAFETALAFYDDErkiCWDSIAEVVP-GKTTAHIIDHYNNL 58
                     5*****************99*************.************97 PP
2Myb_DNA-binding23.99.7e-081211561247
                      HHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  12 lvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++ + +++G+g+W++I+r    +Rt+ q+ s+ qky
   Csa20g038680.1 121 FLIGLAKYGKGDWRSISRNSVRTRTPTQVASHAQKY 156
                      666889*****************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.7E-6961IPR001005SANT/Myb domain
SuperFamilySSF466893.74E-91167IPR009057Homeodomain-like
PfamPF002493.0E-61258IPR001005SANT/Myb domain
CDDcd001671.29E-61359No hitNo description
Gene3DG3DSA:1.10.10.601.1E-692158IPR009057Homeodomain-like
PROSITE profilePS5129411.33693161IPR017930Myb domain
SuperFamilySSF466894.19E-1094161IPR009057Homeodomain-like
SMARTSM007171.197159IPR001005SANT/Myb domain
CDDcd001671.07E-5100157No hitNo description
TIGRFAMsTIGR015571.7E-8120159IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MTLGWNTSVG SYWSRDDDIA FETALAFYDD ERKICWDSIA EVVPGKTTAH IIDHYNNLIR  60
DVMDIESGRV PLPDYRVPEE PNPNARGKRK LKHKRQKGVS WTLDEHRFLL FTYFCNVTLQ  120
FLIGLAKYGK GDWRSISRNS VRTRTPTQVA SHAQKYFERL NSKNKHRNRA SIHDITVDEE  180
NRNISPKQGA IGTWQNGNVN LASASNNQAI QTNSQPSLDL PIHGRPNIGN TQALSSTSNN  240
QAIQTTSQPS LDLPMHGRHN ICNTQALSQP SLNLASSSNN QAIQTTSQPS LDLPRHGRHN  300
LWNTQAISQP SLNLPTYGAP PIWNAQAALP PPPASIPVYG TTLSTMNQPM VGQMPSHFGT  360
NMNHFAQPHM TPGVQPYPLP SYPGPRAPIN MGSSIPYGDM TYANKSQR*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g038680.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010456658.10.0PREDICTED: transcription factor DIVARICATA-like
SwissprotQ9FNN61e-56SRM1_ARATH; Transcription factor SRM1
TrEMBLR0GCU11e-103R0GCU1_9BRAS; Uncharacterized protein
STRINGXP_010456658.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM133911628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23650.11e-101Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]