PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

WRKY

Protein Properties

Length: 293aa MW: 33371.7 Da PI: 5.8862

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa20g036310.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	62.4	8e-20	113	172	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 Dgy WrKYGqK +k+s + rsYYrC+++ +C ++k+ ++ +++p v +tY g+H+++ Csa20g036310.1 113 DGYLWRKYGQKCIKKSAHQRSYYRCSYNidhNCGARKHEQKIKDNPPVYRTTYFGQHTCK 172 9************************9999*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.6E-21	105	173	IPR003657	WRKY domain
PROSITE profile	PS50811	19.611	106	174	IPR003657	WRKY domain
SuperFamily	SSF118290	1.31E-20	109	173	IPR003657	WRKY domain
SMART	SM00774	6.7E-29	111	173	IPR003657	WRKY domain
Pfam	PF03106	6.5E-20	113	172	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009863	Biological Process	salicylic acid mediated signaling pathway
GO:0042742	Biological Process	defense response to bacterium
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MEMNSPHDKA VQAILYGHSC AMRLKMRLDH SKMAESGPVS SYDLAKSIVD CFSNAISILS 60 VKPKSEDEQF SDLSSRDSSP PPPQGSPSKK RKIESTNSSA NWRDDSPDPI YYDGYLWRKY 120 GQKCIKKSAH QRSYYRCSYN IDHNCGARKH EQKIKDNPPV YRTTYFGQHT CKTNHNLDAI 180 FTAVQEPVDD LKSAQMIRFG KDIDQEKEHH SNGFSLSVKH EDEESIREQT MDQYHEMASN 240 NQDCQHVIKE DLSSPSGSYP PPSSSGSESA EFDSDLLFDN QDLWDLYDQF NF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6ir8_A	2e-14	113	172	10	69	OsWRKY45
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00619	PBM	Transfer from AT5G22570	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa20g036310.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK118884	0.0	AK118884.1 Arabidopsis thaliana At5g22570 mRNA for putative WRKY transcription factor 38 (WRKY38), complete cds, clone: RAFL21-21-O16.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010493351.1	0.0	PREDICTED: probable WRKY transcription factor 38
Swissprot	Q8GWF1	1e-149	WRK38_ARATH; Probable WRKY transcription factor 38
TrEMBL	R0FCL8	1e-159	R0FCL8_9BRAS; Uncharacterized protein
STRING	XP_010493351.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13673	17	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22570.1	1e-145	WRKY DNA-binding protein 38

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Singh V,Roy S,Singh D,Nandi AK Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes. J. Biosci., 2014. 39(1): p. 119-26 [PMID:24499796] Janda M, et al. Phospholipase D affects translocation of NPR1 to the nucleus in Arabidopsis thaliana. Front Plant Sci, 2015. 6: p. 59 [PMID:25741350]