PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g036310.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WRKY
Protein Properties Length: 293aa    MW: 33371.7 Da    PI: 5.8862
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g036310.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY62.48e-20113172359
                     -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     Dgy WrKYGqK +k+s + rsYYrC+++   +C ++k+ ++ +++p v  +tY g+H+++
  Csa20g036310.1 113 DGYLWRKYGQKCIKKSAHQRSYYRCSYNidhNCGARKHEQKIKDNPPVYRTTYFGQHTCK 172
                     9**************************9999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.6E-21105173IPR003657WRKY domain
PROSITE profilePS5081119.611106174IPR003657WRKY domain
SuperFamilySSF1182901.31E-20109173IPR003657WRKY domain
SMARTSM007746.7E-29111173IPR003657WRKY domain
PfamPF031066.5E-20113172IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MEMNSPHDKA VQAILYGHSC AMRLKMRLDH SKMAESGPVS SYDLAKSIVD CFSNAISILS  60
VKPKSEDEQF SDLSSRDSSP PPPQGSPSKK RKIESTNSSA NWRDDSPDPI YYDGYLWRKY  120
GQKCIKKSAH QRSYYRCSYN IDHNCGARKH EQKIKDNPPV YRTTYFGQHT CKTNHNLDAI  180
FTAVQEPVDD LKSAQMIRFG KDIDQEKEHH SNGFSLSVKH EDEESIREQT MDQYHEMASN  240
NQDCQHVIKE DLSSPSGSYP PPSSSGSESA EFDSDLLFDN QDLWDLYDQF NF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-141131721069OsWRKY45
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00619PBMTransfer from AT5G22570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g036310.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1188840.0AK118884.1 Arabidopsis thaliana At5g22570 mRNA for putative WRKY transcription factor 38 (WRKY38), complete cds, clone: RAFL21-21-O16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010493351.10.0PREDICTED: probable WRKY transcription factor 38
SwissprotQ8GWF11e-149WRK38_ARATH; Probable WRKY transcription factor 38
TrEMBLR0FCL81e-159R0FCL8_9BRAS; Uncharacterized protein
STRINGXP_010493351.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136731727
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22570.11e-145WRKY DNA-binding protein 38
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Singh V,Roy S,Singh D,Nandi AK
    Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes.
    J. Biosci., 2014. 39(1): p. 119-26
    [PMID:24499796]
  3. Janda M, et al.
    Phospholipase D affects translocation of NPR1 to the nucleus in Arabidopsis thaliana.
    Front Plant Sci, 2015. 6: p. 59
    [PMID:25741350]