PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g026950.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family AP2
Protein Properties Length: 451aa    MW: 50192.1 Da    PI: 7.8822
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g026950.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.31.7e-173684355
             AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    + GVr+++ +gr++AeIrdp++   + r++lg+f+ta eAa a+++a+++++g
  Csa20g026950.1 36 FLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAHEAALAYDRAALSMRG 84
                    56******.**********965...5*************************98 PP
2AP255.31.7e-17157205355
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     + GVr+++ +gr++AeIrdp++   + r++lg+f+ta eAa a+++a+++++g
  Csa20g026950.1 157 FLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAHEAALAYDRAALSMRG 205
                     56******.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.9433592IPR001471AP2/ERF domain
SMARTSM003804.2E-343598IPR001471AP2/ERF domain
CDDcd000185.80E-283594No hitNo description
PRINTSPR003673.7E-73647IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-203693IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.6E-283692IPR001471AP2/ERF domain
PfamPF008475.4E-113884IPR001471AP2/ERF domain
PRINTSPR003673.7E-75874IPR001471AP2/ERF domain
CDDcd000186.90E-28156212No hitNo description
SMARTSM003804.5E-34156219IPR001471AP2/ERF domain
PROSITE profilePS5103220.692156213IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.4E-28157212IPR001471AP2/ERF domain
SuperFamilySSF541713.79E-20157213IPR016177DNA-binding domain
PfamPF008475.4E-11159205IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MGFSLIHQNT STNTTTTTTT GERRGRRSKQ AEPGRFLGVR RRPWGRYAAE IRDPTTKERH  60
WLGTFDTAHE AALAYDRAAL SMRGTQARTN FKPHFQTTRL FIMSTSKTLD HNKPFETSQT  120
QMGFSLIHQN TSTNTTTTTT TGERRGRRSK QAEPGRFLGV RRRPWGRYAA EIRDPTTKER  180
HWLGTFDTAH EAALAYDRAA LSMRGTQART NFVYTPTDVH TILTNPNLHS LIVSPYNNNQ  240
SFLPNSSPQF VIDHHPHYQN YQQPQQHKHT VAQTVSPAAS FKTPVRHQSA DIQAFGNSPQ  300
NSSSNGSLSS SLDEENNFFF SLTNEEHNNS NNNSGYLDCI VPNHCLKPPP EATTTHNQAG  360
ASFTTLEASK AFESYGGFSN SYFEEGEMMM LNHHDFGSCD LSAMITNYGA AAASMSLEDY  420
AITEPQDLSS SSLAAFGDVV ADTTGFYSVF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-2024212373Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the control of cell division patterns during the early lateral root primordium development. Acts downstream of auxin signaling (PubMed:17630277). Regulated by ARF7 and ARF19 in response to auxin. Co-acts with LBD16 and LBD18 to control lateral root development (PubMed:23749813). Involved in the determination of floral meristem identity and suppression of bract growth. Required for proper conversion of secondary inflorescences to flowers. Acts together with NPR5/BOP2 and NPR6/BOP1 to promote expression of LFY and AP1, two central regulators of floral meristem identity (PubMed:19482972). {ECO:0000250|UniProtKB:Q9LND1, ECO:0000269|PubMed:17630277, ECO:0000269|PubMed:19482972, ECO:0000269|PubMed:23749813}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g026950.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:17630277, ECO:0000269|PubMed:23749813}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0693280.0AC069328.1 Genomic Sequence For Arabidopsis thaliana Clone T28N17 From Chromosome V, complete sequence.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010492870.10.0PREDICTED: ethylene-responsive transcription factor ERF086-like
SwissprotQ6J9Q20.0ERF86_ARATH; Ethylene-responsive transcription factor ERF086
TrEMBLA0A178URC30.0A0A178URC3_ARATH; PUCHI
STRINGXP_010492870.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54872650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18560.10.0ERF family protein
Publications ? help Back to Top
  1. Chandler JW,Werr W
    Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation.
    J. Exp. Bot., 2014. 65(12): p. 3097-110
    [PMID:24744428]
  2. Chandler JW,Werr W
    DORNRÖSCHEN, DORNRÖSCHEN-LIKE, and PUCHI redundantly control floral meristem identity and organ initiation in Arabidopsis.
    J. Exp. Bot., 2017. 68(13): p. 3457-3472
    [PMID:28859377]
  3. Chandler JW
    Class VIIIb APETALA2 Ethylene Response Factors in Plant Development.
    Trends Plant Sci., 2018. 23(2): p. 151-162
    [PMID:29074232]