PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa20g026950.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | AP2 | ||||||||
Protein Properties | Length: 451aa MW: 50192.1 Da PI: 7.8822 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.3 | 1.7e-17 | 36 | 84 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + GVr+++ +gr++AeIrdp++ + r++lg+f+ta eAa a+++a+++++g Csa20g026950.1 36 FLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAHEAALAYDRAALSMRG 84 56******.**********965...5*************************98 PP | |||||||
2 | AP2 | 55.3 | 1.7e-17 | 157 | 205 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + GVr+++ +gr++AeIrdp++ + r++lg+f+ta eAa a+++a+++++g Csa20g026950.1 157 FLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAHEAALAYDRAALSMRG 205 56******.**********965...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 20.943 | 35 | 92 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.2E-34 | 35 | 98 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.80E-28 | 35 | 94 | No hit | No description |
PRINTS | PR00367 | 3.7E-7 | 36 | 47 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.29E-20 | 36 | 93 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.6E-28 | 36 | 92 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.4E-11 | 38 | 84 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-7 | 58 | 74 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.90E-28 | 156 | 212 | No hit | No description |
SMART | SM00380 | 4.5E-34 | 156 | 219 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.692 | 156 | 213 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.4E-28 | 157 | 212 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.79E-20 | 157 | 213 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 5.4E-11 | 159 | 205 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 451 aa Download sequence Send to blast |
MGFSLIHQNT STNTTTTTTT GERRGRRSKQ AEPGRFLGVR RRPWGRYAAE IRDPTTKERH 60 WLGTFDTAHE AALAYDRAAL SMRGTQARTN FKPHFQTTRL FIMSTSKTLD HNKPFETSQT 120 QMGFSLIHQN TSTNTTTTTT TGERRGRRSK QAEPGRFLGV RRRPWGRYAA EIRDPTTKER 180 HWLGTFDTAH EAALAYDRAA LSMRGTQART NFVYTPTDVH TILTNPNLHS LIVSPYNNNQ 240 SFLPNSSPQF VIDHHPHYQN YQQPQQHKHT VAQTVSPAAS FKTPVRHQSA DIQAFGNSPQ 300 NSSSNGSLSS SLDEENNFFF SLTNEEHNNS NNNSGYLDCI VPNHCLKPPP EATTTHNQAG 360 ASFTTLEASK AFESYGGFSN SYFEEGEMMM LNHHDFGSCD LSAMITNYGA AAASMSLEDY 420 AITEPQDLSS SSLAAFGDVV ADTTGFYSVF * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 6e-20 | 24 | 212 | 3 | 73 | Ethylene-responsive transcription factor ERF096 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the control of cell division patterns during the early lateral root primordium development. Acts downstream of auxin signaling (PubMed:17630277). Regulated by ARF7 and ARF19 in response to auxin. Co-acts with LBD16 and LBD18 to control lateral root development (PubMed:23749813). Involved in the determination of floral meristem identity and suppression of bract growth. Required for proper conversion of secondary inflorescences to flowers. Acts together with NPR5/BOP2 and NPR6/BOP1 to promote expression of LFY and AP1, two central regulators of floral meristem identity (PubMed:19482972). {ECO:0000250|UniProtKB:Q9LND1, ECO:0000269|PubMed:17630277, ECO:0000269|PubMed:19482972, ECO:0000269|PubMed:23749813}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa20g026950.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:17630277, ECO:0000269|PubMed:23749813}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC069328 | 0.0 | AC069328.1 Genomic Sequence For Arabidopsis thaliana Clone T28N17 From Chromosome V, complete sequence. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010492870.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF086-like | ||||
Swissprot | Q6J9Q2 | 0.0 | ERF86_ARATH; Ethylene-responsive transcription factor ERF086 | ||||
TrEMBL | A0A178URC3 | 0.0 | A0A178URC3_ARATH; PUCHI | ||||
STRING | XP_010492870.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5487 | 26 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18560.1 | 0.0 | ERF family protein |
Publications ? help Back to Top | |||
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