PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa20g021700.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | ZF-HD | ||||||||
Protein Properties | Length: 430aa MW: 46502.2 Da PI: 9.6067 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 101.1 | 7.8e-32 | 55 | 110 | 4 | 58 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 ++YkeClkNhAa++Ggha+DGCgEfmps+ + +++++l+CaACgCHRnFHRre + Csa20g021700.1 55 TTYKECLKNHAARIGGHALDGCGEFMPSPAYNsNDPTTLTCAACGCHRNFHRREDD 110 78***************************999889******************975 PP | |||||||
2 | ZF-HD_dimer | 25.2 | 3.8e-08 | 253 | 267 | 44 | 58 |
ZF-HD_dimer 44 aACgCHRnFHRreve 58 ACgCHRnFHRre + Csa20g021700.1 253 XACGCHRNFHRREDD 267 69**********975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 1.0E-25 | 47 | 108 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 3.3E-27 | 55 | 109 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 8.9E-31 | 56 | 108 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.803 | 57 | 108 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 3.03E-19 | 168 | 239 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.7E-27 | 170 | 238 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 6.6E-23 | 181 | 237 | IPR006455 | Homeodomain, ZF-HD class |
Pfam | PF04770 | 1.3E-4 | 254 | 266 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 2.77E-19 | 326 | 397 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.7E-27 | 328 | 396 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 6.6E-23 | 339 | 395 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 430 aa Download sequence Send to blast |
MDVIATTTTI VSDLDSRQPE IEAPIRIQPA KPISFSNGKR CHHNHLASEA AAVATTYKEC 60 LKNHAARIGG HALDGCGEFM PSPAYNSNDP TTLTCAACGC HRNFHRREDD PLSASAVVPA 120 IEFRPHNRHQ LPPPPPPHPV GIRSPDDDDS ASPPPISSSY MLLALSGGGG GGANSAGPMS 180 RKRFRTKFSQ YQKEKMFEFA ERVGWRMPRA DDVAVKELCR EIGVDKSVFK VWMHNNKISG 240 RGGAKRANGG VFXACGCHRN FHRREDDPLS ASAVVPAIEF RPHNRHQLPP PPPPPHPVGI 300 RSPDDDDSAS PPPISSSYML LALSGGGGGG ANSAGPMSRK RFRTKFSQYQ KEKMFEFAER 360 VGWRMPRADD VAVKELCREI GVDKSVFKVW MHNNKISGRG GAKRANGGVV SGGDSRESVV 420 PTNGSFSST* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 4e-21 | 180 | 398 | 16 | 76 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa20g021700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL353993 | 0.0 | AL353993.1 Arabidopsis thaliana DNA chromosome 5, BAC clone F8M21 (ESSA project). | |||
GenBank | BT012195 | 0.0 | BT012195.1 Arabidopsis thaliana At5g15210 gene, complete cds. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010420179.1 | 1e-160 | PREDICTED: zinc-finger homeodomain protein 8-like | ||||
Swissprot | Q9LXG0 | 1e-150 | ZHD8_ARATH; Zinc-finger homeodomain protein 8 | ||||
TrEMBL | A0A178UMR3 | 1e-147 | A0A178UMR3_ARATH; ZHD8 | ||||
STRING | XP_010420179.1 | 1e-159 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2220 | 25 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15210.1 | 1e-132 | homeobox protein 30 |
Publications ? help Back to Top | |||
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