PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g021340.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 827aa    MW: 91546.4 Da    PI: 9.4723
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g021340.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.19e-154465181694
                     EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                     +++p ++ e+   + + +kt +l+ + g+ W+v +  +  +g++++ +GW +Fv +n+Lk+g+f++F +dg ++    v
  Csa20g021340.1 446 VMIPTSYYEHL--PRRLPKTAILMGTGGKIWKVAM--KSIRGQVYFVQGWPSFVADNELKDGEFLTFVFDGYNRY--EV 518
                     58999999544..456899****************..999999************************98874433..45 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF039012.9E-11833423IPR005599GPI mannosyltransferase
PROSITE profilePS5086313.239431524IPR003340B3 DNA binding domain
SMARTSM010196.5E-12438524IPR003340B3 DNA binding domain
SuperFamilySSF1019364.12E-19440526IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.8E-16444525IPR015300DNA-binding pseudobarrel domain
PfamPF023621.2E-11446512IPR003340B3 DNA binding domain
CDDcd100172.18E-14447521No hitNo description
Gene3DG3DSA:3.40.50.7204.1E-46561715IPR016040NAD(P)-binding domain
HamapMF_0192527.904561823IPR000304Pyrroline-5-carboxylate reductase
PfamPF038074.4E-21562657IPR028939Pyrroline-5-carboxylate reductase, catalytic, N-terminal
SuperFamilySSF517352.42E-30562714IPR016040NAD(P)-binding domain
TIGRFAMsTIGR001122.3E-88563823IPR000304Pyrroline-5-carboxylate reductase
Gene3DG3DSA:1.10.3730.101.1E-44718823IPR029036Pyrroline-5-carboxylate reductase, dimerisation domain
SuperFamilySSF481798.84E-38718825IPR0089276-phosphogluconate dehydrogenase C-terminal domain-like
PfamPF147481.6E-40719823IPR029036Pyrroline-5-carboxylate reductase, dimerisation domain
PROSITE patternPS005210779801IPR000304Pyrroline-5-carboxylate reductase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006561Biological Processproline biosynthetic process
GO:0055114Biological Processoxidation-reduction process
GO:0003677Molecular FunctionDNA binding
GO:0004735Molecular Functionpyrroline-5-carboxylate reductase activity
GO:0016757Molecular Functiontransferase activity, transferring glycosyl groups
Sequence ? help Back to Top
Protein Sequence    Length: 827 aa     Download sequence    Send to blast
MEIRKRKIAG GDGDGGASVN DVNEPDSRSP RKIFLLCLGF RVVNALLIKT YFNPDEHWQS  60
LEVAHRTVFG YGYMTWEWKR GIRSFLHPMV FAFLYKLLQV TGLDTPYIMR KAPRLMQSVF  120
SAIGDLYLYK LSDALYGKNV ASWSLFCQMA NWFVFFCLNR TFSNCLETVL TIMGLYYWPC  180
IRNHSTNYPV NRKCGLVIAA LACAIRPTSA IIWLYVGMLE LFLTPNKVKF IILEVIPIGS  240
LVLGFTCLLD RLMYGSWVIV PLNFLKFNFL SSGGDYYGTH PWHWYFSQGF LVMLFTFTPF  300
SITGMIKSKN HKLSALILWV LALYSVLGHK EFRFVLPVLP IALIFSGYAF ARMEVSGSLS  360
SSVTKKEQVP RQNHTTKWSP KLRLSVFFLL ATNIPMALYM SLYHQRGTED AMNYLSDEAY  420
KGRVKRFFHA HFKVDRDLQS SVVVYVMIPT SYYEHLPRRL PKTAILMGTG GKIWKVAMKS  480
IRGQVYFVQG WPSFVADNEL KDGEFLTFVF DGYNRYEVSI YGHGGCKEIR AVVEVEDISD  540
DSESDNNSDE SLILPIPAES FKVGFIGAGK MAESIARGVV ASGVLPPNRI STAVHSNLNR  600
RDVFESFGVS VFSNSEDVVK ESDVVIFSVK PQVVKKAVTE LRSKLSKNKI LVSVAAGIKL  660
ADLQEWSGQD RFIRVMPNTP AAVGEAASVM SLGTGATEED GAIVAKLFGA VGKILKADEK  720
MFDAVTGLSG SGPAYIFLAI EALADGGVAA GLPRELALSL ASQTVLGAAT MVSKTGKHPG  780
VLKDDVTSPG GTTIAGVHEL EKGSFRATLM NAVVAAAKRS KELSQS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5bsg_A1e-1365538246277Pyrroline-5-carboxylate reductase
5bsg_B1e-1365538246277Pyrroline-5-carboxylate reductase
5bsg_C1e-1365538246277Pyrroline-5-carboxylate reductase
5bsg_D1e-1365538246277Pyrroline-5-carboxylate reductase
5bsg_E1e-1365538246277Pyrroline-5-carboxylate reductase
5bsg_F1e-1365538246277Pyrroline-5-carboxylate reductase
5bsg_G1e-1365538246277Pyrroline-5-carboxylate reductase
5bsg_H1e-1365538246277Pyrroline-5-carboxylate reductase
5bsg_I1e-1365538246277Pyrroline-5-carboxylate reductase
5bsg_J1e-1365538246277Pyrroline-5-carboxylate reductase
5bsh_A1e-1365538246277Pyrroline-5-carboxylate reductase
5bsh_B1e-1365538246277Pyrroline-5-carboxylate reductase
5bsh_C1e-1365538246277Pyrroline-5-carboxylate reductase
5bsh_D1e-1365538246277Pyrroline-5-carboxylate reductase
5bsh_E1e-1365538246277Pyrroline-5-carboxylate reductase
5bsh_F1e-1365538246277Pyrroline-5-carboxylate reductase
5bsh_G1e-1365538246277Pyrroline-5-carboxylate reductase
5bsh_H1e-1365538246277Pyrroline-5-carboxylate reductase
5bsh_I1e-1365538246277Pyrroline-5-carboxylate reductase
5bsh_J1e-1365538246277Pyrroline-5-carboxylate reductase
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g021340.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0504560.0AY050456.1 Arabidopsis thaliana AT5g14850/T9L3_150 mRNA, complete cds.
GenBankAY1206930.0AY120693.1 Arabidopsis thaliana AT5g14850/T9L3_150 mRNA, complete cds.
GenBankKJ1386920.0KJ138692.1 Arabidopsis thaliana glycosyltransferase (AT5G14850) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010492303.10.0PREDICTED: GPI mannosyltransferase 3-like isoform X1
TrEMBLR0FEL00.0R0FEL0_9BRAS; Mannosyltransferase
STRINGXP_010492303.10.0(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06220.14e-44B3 family protein