PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa20g017050.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

MYB

Protein Properties

Length: 957aa MW: 106875 Da PI: 4.9405

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa20g017050.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.3	7.3e-18	33	79	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg WT+eEde l +av+ + g++Wk+Ia+++ Rt+ qc +rwqk+l Csa20g017050.1 33 RGQWTAEEDEVLRKAVHSFKGKNWKKIAEYFK-DRTDVQCLHRWQKVL 79 89***************************9.**********986 PP
2	Myb_DNA-binding	64.3	2.4e-20	85	131	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde +v++++++G++ W+tIar+++ gR +kqc++rw+++l Csa20g017050.1 85 KGPWTKEEDEMIVQLIEKYGPKKWSTIARYLP-GRIGKQCRERWHNHL 131 79****************************.***********97 PP
3	Myb_DNA-binding	42.6	1.4e-13	137	179	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE++ l++a++ +G++ W+ + ++ gR+++ +k++w+ Csa20g017050.1 137 KEAWTQEEELVLIRAHQIYGNK-WAELTKFLP-GRSDNGIKNHWH 179 579*****************.*****.*********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	18.899	28	79	IPR017930	Myb domain
SuperFamily	SSF46689	2.8E-15	30	85	IPR009057	Homeodomain-like
SMART	SM00717	8.7E-15	32	81	IPR001005	SANT/Myb domain
Pfam	PF00249	1.2E-15	33	79	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.5E-22	34	87	IPR009057	Homeodomain-like
CDD	cd00167	2.06E-13	36	79	No hit	No description
PROSITE profile	PS51294	33.057	80	135	IPR017930	Myb domain
SuperFamily	SSF46689	1.39E-31	82	178	IPR009057	Homeodomain-like
SMART	SM00717	1.5E-19	84	133	IPR001005	SANT/Myb domain
Pfam	PF00249	3.1E-18	85	131	IPR001005	SANT/Myb domain
CDD	cd00167	3.40E-17	87	131	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.5E-27	88	135	IPR009057	Homeodomain-like
PROSITE profile	PS51294	18.044	136	186	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.3E-19	136	186	IPR009057	Homeodomain-like
SMART	SM00717	4.4E-12	136	184	IPR001005	SANT/Myb domain
Pfam	PF00249	1.1E-11	137	179	IPR001005	SANT/Myb domain
CDD	cd00167	2.43E-9	139	179	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 957 aa Download sequence Send to blast
MESESTSTIS TPQDGIPKSR HGRTSGPARR STRGQWTAEE DEVLRKAVHS FKGKNWKKIA 60 EYFKDRTDVQ CLHRWQKVLN PELVKGPWTK EEDEMIVQLI EKYGPKKWST IARYLPGRIG 120 KQCRERWHNH LNPAINKEAW TQEEELVLIR AHQIYGNKWA ELTKFLPGRS DNGIKNHWHS 180 SVKKKLDSYM SSGLLDQYQA MPLAPYERSS TLQSAFMQSN IDGNGEIDSR PNSSMVGCSL 240 SAGDFSNGAI NMDHHFYPYG NSQETEQAVY HSDQYFYPEL EDISVSISEV SCDMEDCPQF 300 PDHNVSTSPS QDYQFDFQEL SDISLEMRQN NMSELPMPYT KESKESTLEP TNSTLNIDVA 360 TYTNSANVLT PETECCRVLF PDQESEEHSV STCRSLTQEP NEVNQSDSRD PILCASGSDS 420 QISEATKSPM QSSSSRLNAT AASGKETLRP APLIITPDKY AKKSSGLICH PFEAEPKCTT 480 NGNGRFICID DPSSSTCVDG GTSNSSEEDS YHVNDSKKLV AVSDFASLAE DRPHSLPKDD 540 PNATSEQHHE DVGASSSLAF PSLDVPVFSC DLLQSKNDPL HDYSPLGIRK LLMSTMTCIS 600 PLRLWESPTA KKTLVGAKSI LRKRTRDLLT PLSEKRSDKK LETDIAASLA KDFSRLDVMF 660 DESENRESIF GNNTDVILGD RVNGGEGEEN WRSNPSLLFS HKMPEETMHI RKSLEKAEQT 720 CMEANVREKD GSEADVENAE SFSGVLSELN NCKPVLSSPG QSVTKAQKAQ VLTPRSQFQK 780 TFMATSNKEQ HSSSSLCLVI NSPSRARNTE GHLVDNETRN ENFSIFCGTP FRRGLESPSA 840 WKSPFYVNSL LPSPRFDTEI TIEDMGYIFS PGERSYEGIG VMTQRNEHAS AFAAFADDAM 900 EVSLSPTNDD AEQKKELNKE NNDPLLAERR VLDFNDCESP VKATEEVSSY LLKGCR*

Sequence ? help Back to Top

Protein Sequence Length: 957 aa Download sequence Send to blast

MESESTSTIS TPQDGIPKSR HGRTSGPARR STRGQWTAEE DEVLRKAVHS FKGKNWKKIA  60
EYFKDRTDVQ CLHRWQKVLN PELVKGPWTK EEDEMIVQLI EKYGPKKWST IARYLPGRIG  120
KQCRERWHNH LNPAINKEAW TQEEELVLIR AHQIYGNKWA ELTKFLPGRS DNGIKNHWHS  180
SVKKKLDSYM SSGLLDQYQA MPLAPYERSS TLQSAFMQSN IDGNGEIDSR PNSSMVGCSL  240
SAGDFSNGAI NMDHHFYPYG NSQETEQAVY HSDQYFYPEL EDISVSISEV SCDMEDCPQF  300
PDHNVSTSPS QDYQFDFQEL SDISLEMRQN NMSELPMPYT KESKESTLEP TNSTLNIDVA  360
TYTNSANVLT PETECCRVLF PDQESEEHSV STCRSLTQEP NEVNQSDSRD PILCASGSDS  420
QISEATKSPM QSSSSRLNAT AASGKETLRP APLIITPDKY AKKSSGLICH PFEAEPKCTT  480
NGNGRFICID DPSSSTCVDG GTSNSSEEDS YHVNDSKKLV AVSDFASLAE DRPHSLPKDD  540
PNATSEQHHE DVGASSSLAF PSLDVPVFSC DLLQSKNDPL HDYSPLGIRK LLMSTMTCIS  600
PLRLWESPTA KKTLVGAKSI LRKRTRDLLT PLSEKRSDKK LETDIAASLA KDFSRLDVMF  660
DESENRESIF GNNTDVILGD RVNGGEGEEN WRSNPSLLFS HKMPEETMHI RKSLEKAEQT  720
CMEANVREKD GSEADVENAE SFSGVLSELN NCKPVLSSPG QSVTKAQKAQ VLTPRSQFQK  780
TFMATSNKEQ HSSSSLCLVI NSPSRARNTE GHLVDNETRN ENFSIFCGTP FRRGLESPSA  840
WKSPFYVNSL LPSPRFDTEI TIEDMGYIFS PGERSYEGIG VMTQRNEHAS AFAAFADDAM  900
EVSLSPTNDD AEQKKELNKE NNDPLLAERR VLDFNDCESP VKATEEVSSY LLKGCR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h88_C	3e-68	33	186	6	159	MYB PROTO-ONCOGENE PROTEIN
1h89_C	3e-68	33	186	6	159	MYB PROTO-ONCOGENE PROTEIN
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds 5'-AACGG-3' motifs in gene promoters (PubMed:21862669). Involved in the regulation of cytokinesis, probably via the activation of several G2/M phase-specific genes transcription (e.g. KNOLLE) (PubMed:17287251, PubMed:21862669, PubMed:25806785). Required for the maintenance of diploidy (PubMed:21862669). {ECO:0000269\|PubMed:17287251, ECO:0000269\|PubMed:21862669, ECO:0000269\|PubMed:25806785}.; FUNCTION: Involved in transcription regulation during induced endoreduplication at the powdery mildew (e.g. G.orontii) infection site, thus promoting G.orontii growth and reproduction. {ECO:0000269\|PubMed:20018666}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa20g017050.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Slightly induced by salicylic acid (SA) (PubMed:16463103). Expressed in a cell cycle-dependent manner, with highest levels 2 hours before the peak of mitotic index in cells synchronized by aphidicolin. Activated by CYCB1 (PubMed:17287251). Accumulates at powdery mildew (e.g. G.orontii) infected cells. {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:17287251}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF371975	0.0	AF371975.2 Arabidopsis thaliana putative c-myb-like transcription factor MYB3R-4 (MYB3R4) mRNA, complete cds.
GenBank	AY519650	0.0	AY519650.1 Arabidopsis thaliana MYB transcription factor (At5g11510) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010491886.1	0.0	PREDICTED: myb-related protein 3R-1-like
Swissprot	Q94FL9	0.0	MB3R4_ARATH; Transcription factor MYB3R-4
TrEMBL	R0H5A0	0.0	R0H5A0_9BRAS; Uncharacterized protein
STRING	XP_010491886.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13213	18	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11510.1	0.0	myb domain protein 3r-4

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Saito T, et al. Genetic interaction between G2/M phase-specific transcription factor MYB3R4 and MAPKKK ANP3 for execution of cytokinesis in Arabidopsis thaliana. Plant Signal Behav, 2015. 10(3): p. e990817 [PMID:25806785] Kobayashi K, et al. Transcriptional repression by MYB3R proteins regulates plant organ growth. EMBO J., 2015. 34(15): p. 1992-2007 [PMID:26069325] Chen P, et al. Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage. Nat Commun, 2017. 8(1): p. 635 [PMID:28935922]