PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g016450.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 438aa    MW: 49269 Da    PI: 8.4733
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g016450.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.56.4e-18114160148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+eEd +l+++vkq+G + W+ I++++  gR +kqc++rw+++l
   Csa20g016450.1 114 KGQWTAEEDRKLIKLVKQHGDRKWAIISEKFE-GRAGKQCRERWHNHL 160
                      799*****************************.*************97 PP
2Myb_DNA-binding544e-17166208145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +++W++eE+  +v+a+++ G++ W+ Ia+ ++ gRt++++k++w+
   Csa20g016450.1 166 KDSWSEEEERVFVEAHTRIGNK-WAEIAKLIQ-GRTENSIKNHWN 208
                      679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.954109164IPR017930Myb domain
SuperFamilySSF466891.69E-28111207IPR009057Homeodomain-like
SMARTSM007173.5E-16113162IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-26115167IPR009057Homeodomain-like
CDDcd001671.02E-14117160No hitNo description
PfamPF139212.5E-19117174No hitNo description
SMARTSM007171.2E-13165213IPR001005SANT/Myb domain
PROSITE profilePS5129418.914165215IPR017930Myb domain
CDDcd001674.55E-10168211No hitNo description
Gene3DG3DSA:1.10.10.605.1E-19168213IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051302Biological Processregulation of cell division
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MDDQRIREKS LAHCAAPPLT AVERFLNSQK SGALCFKTQE RSIDRPIFKT ARAIETRKDN  60
KENMMMFGPR KGKNLAVNSG NRNVIGEMIV KGATTRDYQK STTCKKRPYK NLIKGQWTAE  120
EDRKLIKLVK QHGDRKWAII SEKFEGRAGK QCRERWHNHL RPDIKKDSWS EEEERVFVEA  180
HTRIGNKWAE IAKLIQGRTE NSIKNHWNAT KRRQNSKRKH KRTRNVDSNS SDIDDLSPSA  240
KRPCILEDYI KSIENNDKDN GENIFTTGGN NVALSTSNLD DGDSTSSLLD DPYDEELVFL  300
RNIFANHPVS LDHMDLSQGS DEITQSSSSG FMFKNPNPKP SSHNNIVGNQ LGTMVTAEPA  360
MTSHLASDIY LSDLLDGTAS SSSLSFMSSN NSEHAAENEL FVPQANSTGE RREMDLIEML  420
SGSSTTGGTN NIWFPLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C1e-441122142104C-Myb DNA-Binding Domain
1msf_C1e-441122142104C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1210221KRRQNSKRKHKR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for female gametophyte fertility (PubMed:23057675, PubMed:24068955). Acts redundantly with MYB119 to initiate the FG5 transition during female gametophyte development. The FG5 transition represents the switch between free nuclear divisions and cellularization-differentiation in female gametophyte, and occurs during developmental stage FG5 (PubMed:24068955). {ECO:0000269|PubMed:23057675, ECO:0000269|PubMed:24068955}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g016450.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5196200.0AY519620.1 Arabidopsis thaliana MYB transcription factor (At5g11050) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010491800.10.0PREDICTED: myb-related protein 330-like
SwissprotQ9FY600.0MYB64_ARATH; Transcription factor MYB64
TrEMBLR0FKF00.0R0FKF0_9BRAS; Uncharacterized protein
STRINGXP_010491800.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42652656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11050.10.0myb domain protein 64
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]