PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g015840.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family AP2
Protein Properties Length: 595aa    MW: 66682.8 Da    PI: 6.8654
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g015840.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP231.44.7e-10275331155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++gr++A+++d  +       rk  + g ++ +++Aa+a++ a++k+++
  Csa20g015840.1 275 SIYRGVTRHRWTGRYEAHLWDnSCR-RegqARKGRQ-GGYDKEDKAARAYDLAALKYWN 331
                     57*******************4444.2344336655.7799999*************97 PP
2AP249.69.9e-16374425155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Csa20g015840.1 374 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 425
                     57****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.9E-8275331IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-13275340IPR016177DNA-binding domain
CDDcd000181.77E-17275341No hitNo description
PROSITE profilePS5103216.753276339IPR001471AP2/ERF domain
SMARTSM003801.8E-18276345IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-10276339IPR001471AP2/ERF domain
PRINTSPR003675.5E-6277288IPR001471AP2/ERF domain
CDDcd000183.28E-11374433No hitNo description
PfamPF008474.2E-10374425IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-17374434IPR016177DNA-binding domain
PROSITE profilePS5103219.111375433IPR001471AP2/ERF domain
SMARTSM003807.9E-31375439IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.6E-18375433IPR001471AP2/ERF domain
PRINTSPR003675.5E-6415435IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    Send to blast
MAPMTNWLTF SLSPMEMLRS SDQSQFVSYD ASSAASSSPY LLDNFYGWTN QKPQEFFKEE  60
AHLAAAASMA DSTILTTFVD PQSHHSQSHI PKLEDFLGDS SSMVRYSDNS QTETQDSSLT  120
QIYDPRHHHQ NHHNQTGFYS DHHDFKTMAG FQTAFSTNSG SEVDDSASIG RTHLAGEYLG  180
HVVESSSGPD LGFHGGSTNT GGALSLAVNV NNNSTNQHRN DNEITNHHYR GERNNNNEHN  240
NENKTESEKE KPIVAVETSD CSNKKIADTF GQRTSIYRGV TRHRWTGRYE AHLWDNSCRR  300
EGQARKGRQG GYDKEDKAAR AYDLAALKYW NATATTNFPI TNYSKELEDM KHMTKQEFIA  360
SLRRKSSGFS RGASIYRGVT RHHQQGRWQA RIGRVAGNKD LYLGTFATEE EAAEAYDIAA  420
IKFRGINAVT NFEMNRYDVE AIMKSALPIG GAAKRLKLSL EAASSEQKPI LGHQLHHFQQ  480
QQQQQQQQLQ LQSSPNHSSI NFALCPNSAV QSQQIIPCGI PFEAAALYHH QQQQQQQQQQ  540
QQQQQQQQNF FQHFPANAAS DSTGSNNNSN VQGSMGLMAP NPAEFFLWPN NQSY*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g015840.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY9741970.0AY974197.1 Arabidopsis thaliana clone At5g10510 AP2/EREBP transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010491724.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL6
SwissprotQ52QU20.0AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLD7M2X90.0D7M2X9_ARALL; Uncharacterized protein
STRINGXP_010491724.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33332765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.20.0AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]