PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa20g015840.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | AP2 | ||||||||
Protein Properties | Length: 595aa MW: 66682.8 Da PI: 6.8654 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 31.4 | 4.7e-10 | 275 | 331 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + rk + g ++ +++Aa+a++ a++k+++ Csa20g015840.1 275 SIYRGVTRHRWTGRYEAHLWDnSCR-RegqARKGRQ-GGYDKEDKAARAYDLAALKYWN 331 57*******************4444.2344336655.7799999*************97 PP | |||||||
2 | AP2 | 49.6 | 9.9e-16 | 374 | 425 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++grW A+I + +k +lg+f t+eeAa+a++ a+ k++g Csa20g015840.1 374 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 425 57****************988532...5************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 7.9E-8 | 275 | 331 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.63E-13 | 275 | 340 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.77E-17 | 275 | 341 | No hit | No description |
PROSITE profile | PS51032 | 16.753 | 276 | 339 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.8E-18 | 276 | 345 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-10 | 276 | 339 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.5E-6 | 277 | 288 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.28E-11 | 374 | 433 | No hit | No description |
Pfam | PF00847 | 4.2E-10 | 374 | 425 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-17 | 374 | 434 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.111 | 375 | 433 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.9E-31 | 375 | 439 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.6E-18 | 375 | 433 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.5E-6 | 415 | 435 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 595 aa Download sequence Send to blast |
MAPMTNWLTF SLSPMEMLRS SDQSQFVSYD ASSAASSSPY LLDNFYGWTN QKPQEFFKEE 60 AHLAAAASMA DSTILTTFVD PQSHHSQSHI PKLEDFLGDS SSMVRYSDNS QTETQDSSLT 120 QIYDPRHHHQ NHHNQTGFYS DHHDFKTMAG FQTAFSTNSG SEVDDSASIG RTHLAGEYLG 180 HVVESSSGPD LGFHGGSTNT GGALSLAVNV NNNSTNQHRN DNEITNHHYR GERNNNNEHN 240 NENKTESEKE KPIVAVETSD CSNKKIADTF GQRTSIYRGV TRHRWTGRYE AHLWDNSCRR 300 EGQARKGRQG GYDKEDKAAR AYDLAALKYW NATATTNFPI TNYSKELEDM KHMTKQEFIA 360 SLRRKSSGFS RGASIYRGVT RHHQQGRWQA RIGRVAGNKD LYLGTFATEE EAAEAYDIAA 420 IKFRGINAVT NFEMNRYDVE AIMKSALPIG GAAKRLKLSL EAASSEQKPI LGHQLHHFQQ 480 QQQQQQQQLQ LQSSPNHSSI NFALCPNSAV QSQQIIPCGI PFEAAALYHH QQQQQQQQQQ 540 QQQQQQQQNF FQHFPANAAS DSTGSNNNSN VQGSMGLMAP NPAEFFLWPN NQSY* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa20g015840.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY974197 | 0.0 | AY974197.1 Arabidopsis thaliana clone At5g10510 AP2/EREBP transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010491724.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor AIL6 | ||||
Swissprot | Q52QU2 | 0.0 | AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6 | ||||
TrEMBL | D7M2X9 | 0.0 | D7M2X9_ARALL; Uncharacterized protein | ||||
STRING | XP_010491724.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3333 | 27 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10510.2 | 0.0 | AINTEGUMENTA-like 6 |
Publications ? help Back to Top | |||
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