PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa20g015580.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | MYB | ||||||||
Protein Properties | Length: 342aa MW: 38309.8 Da PI: 5.9886 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.9 | 5.4e-19 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ede+lv++v+++G +W++ ++ g++R++k+c++rw +yl Csa20g015580.1 14 KGPWTPDEDEKLVNYVQEHGHSSWRALPKLAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.8 | 4.6e-17 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgr++++E++ +++++ lG++ W+tIa+ ++ gRt++++k++w+++l Csa20g015580.1 67 RGRFSPDEEQTILNLHSVLGNK-WSTIANQLP-GRTDNEIKNFWNTHL 112 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.6E-24 | 6 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.088 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.47E-31 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.0E-15 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-17 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.91E-12 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.031 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-27 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.3E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.5E-15 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.73E-11 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence Send to blast |
MGRSPSSDDS GLKKGPWTPD EDEKLVNYVQ EHGHSSWRAL PKLAGLNRCG KSCRLRWTNY 60 LRPDIKRGRF SPDEEQTILN LHSVLGNKWS TIANQLPGRT DNEIKNFWNT HLKKKLIHMG 120 IDPMTHRPRT DIFTGLSQLM SLSSNLRGYV DLQQQFPVDQ DHHTILKLQT EMAKIQLFQY 180 LLQPSSFMNS VNPNDLDSLS LLNSIASFKE TNSNNLDQLG CLGSYLQDFN SLPPLKTLNS 240 NMEPSSVYPQ NPDDNHFKFF TQRENLPVSP VWLSDPSIST QSLLPSLGPS SVVTDDLIRN 300 QYGVEDVNSN ITSSSGQESA ASASAAWPDH LLDDSIFSDI P* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-29 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa20g015580.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by gravity in roots. {ECO:0000269|PubMed:24902892}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY519619 | 0.0 | AY519619.1 Arabidopsis thaliana MYB transcription factor (At5g10280) mRNA, complete cds. | |||
GenBank | BT002877 | 0.0 | BT002877.1 Arabidopsis thaliana clone RAFL14-88-D17 (R20400) putative myb family transcription factor (At5g10280) mRNA, complete cds. | |||
GenBank | BT004402 | 0.0 | BT004402.1 Arabidopsis thaliana clone U20400 putative myb family transcription factor (At5g10280) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010491688.1 | 0.0 | PREDICTED: transcription factor MYB39-like | ||||
Refseq | XP_010491689.1 | 0.0 | PREDICTED: transcription factor MYB39-like | ||||
Refseq | XP_010491690.1 | 0.0 | PREDICTED: transcription factor MYB39-like | ||||
Refseq | XP_010491691.1 | 0.0 | PREDICTED: transcription factor MYB39-like | ||||
Refseq | XP_010491692.1 | 0.0 | PREDICTED: transcription factor MYB39-like | ||||
Refseq | XP_010491693.1 | 0.0 | PREDICTED: transcription factor MYB39-like | ||||
Swissprot | Q9SBF3 | 0.0 | MYB92_ARATH; Transcription factor MYB92 | ||||
TrEMBL | A0A178UPI6 | 0.0 | A0A178UPI6_ARATH; MYB92 | ||||
STRING | XP_010491687.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10280.1 | 0.0 | myb domain protein 92 |
Publications ? help Back to Top | |||
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