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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Csa20g011700.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family |
M-type_MADS |
Protein Properties |
Length: 331aa MW: 38202.9 Da PI: 9.6528 |
Description |
M-type_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Csa20g011700.1 | genome | CSGP | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 80.3 | 1.3e-25 | 5 | 53 | 3 | 51 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
++++s +++++++R+++i+KKA+ELSvLC++ev+vi+++++g+l+++++
Csa20g011700.1 5 SSSSSCNSTSLTNRLKTIFKKAYELSVLCAIEVCVIYYGPDGRLKTWPK 53
79999******************************************96 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 331 aa
Download sequence Send
to blast |
MRQASSSSSC NSTSLTNRLK TIFKKAYELS VLCAIEVCVI YYGPDGRLKT WPKEKEKVKD 60 MAMRYKEARK RNKSLNLHEF LEKEKDKDKG NTDLKKKKQR NNVKYPNFDH YSPKQLSQLI 120 QSLERTLSKL QERLRFVEAK KQRNANLVHP NQQPLNPSKF SLYMYNHEDA TFSQLPLSAS 180 QSNQLTNYQN RLMKQEPYSY SHNMCVDNTN FQHPYVSTTQ DYSQLLPVQA SAVNNLGLKN 240 NHLIQKQELY GSHHNMPMIS DIINHNNVLQ HSHLSNTAPH DFSSDFQNIP YGENEMVGNT 300 NFSQYTFSSY DTTTLTSLHT IPNSHGVERG *
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AB011479 | 8e-90 | AB011479.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MNA5. |
GenBank | AY141224 | 8e-90 | AY141224.1 Arabidopsis thaliana MADS-box protein AGL78 mRNA, complete cds. |
GenBank | CP002688 | 8e-90 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |