PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

M-type_MADS

Protein Properties

Length: 331aa MW: 38202.9 Da PI: 9.6528

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa20g011700.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	80.3	1.3e-25	5	53	3	51
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ++++s +++++++R+++i+KKA+ELSvLC++ev+vi+++++g+l+++++ Csa20g011700.1 5 SSSSSCNSTSLTNRLKTIFKKAYELSVLCAIEVCVIYYGPDGRLKTWPK 53 79999******************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	6.4E-4	1	54	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.4E-14	9	51	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	4.97E-16	11	87	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	11.325	13	55	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MRQASSSSSC NSTSLTNRLK TIFKKAYELS VLCAIEVCVI YYGPDGRLKT WPKEKEKVKD 60 MAMRYKEARK RNKSLNLHEF LEKEKDKDKG NTDLKKKKQR NNVKYPNFDH YSPKQLSQLI 120 QSLERTLSKL QERLRFVEAK KQRNANLVHP NQQPLNPSKF SLYMYNHEDA TFSQLPLSAS 180 QSNQLTNYQN RLMKQEPYSY SHNMCVDNTN FQHPYVSTTQ DYSQLLPVQA SAVNNLGLKN 240 NHLIQKQELY GSHHNMPMIS DIINHNNVLQ HSHLSNTAPH DFSSDFQNIP YGENEMVGNT 300 NFSQYTFSSY DTTTLTSLHT IPNSHGVERG *

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305\|PubMed:26462908}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa20g011700.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB011479	8e-90	AB011479.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MNA5.
GenBank	AY141224	8e-90	AY141224.1 Arabidopsis thaliana MADS-box protein AGL78 mRNA, complete cds.
GenBank	CP002688	8e-90	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_201336.1	1e-133	AGAMOUS-like 78
Swissprot	Q9FLL0	9e-65	AGL75_ARATH; Agamous-like MADS-box protein AGL75
TrEMBL	Q9FKQ5	1e-132	Q9FKQ5_ARATH; AGAMOUS-like 78
STRING	XP_010495112.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM566	20	126

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65330.1	1e-133	AGAMOUS-like 78

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]