PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g009570.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ARR-B
Protein Properties Length: 627aa    MW: 69926.4 Da    PI: 6.8514
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g009570.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like64.32.3e-20224277155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k+++ Wt  L + F++a++++ G +kA+Pk+il +m+v+ Lt+e+v+SHLQkYR+
  Csa20g009570.1 224 KTKISWTDGLNDLFLQAIRHI-GLDKAVPKKILAFMNVPYLTRENVASHLQKYRI 277
                     6799*****************.********************************6 PP
2Response_reg64.55.2e-22181331109
                     EEEESSSHHHHHHHHHHHHHTTC.....EEEE..EESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHH CS
    Response_reg   1 vlivdDeplvrellrqalekegy.....eeva..eaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeeda 86 
                     +l+vdD+p+++e+l ++l k++y     +e++  + +d+ +al++lk ++  +Dli++D  mp m+Gl+l ++i+ee  +lp+ivv+a ++    
  Csa20g009570.1  18 ILVVDDDPVILEVLPKMLVKSKYrdpsvMEIKviAEEDPVKALAILKLQRnnIDLIITDYYMPSMNGLQLKRRITEEIGNLPVIVVSADAN--KE 110
                     89*****************888855444333322557888999998555555***********************9999********9888..66 PP

                     HHHHHTTESEEEESS--HHHHHH CS
    Response_reg  87 lealkaGakdflsKpfdpeelvk 109
                     +e l  Ga +fl Kp++  +l k
  Csa20g009570.1 111 QESLTCGALGFLPKPIQATDLPK 133
                     89***************999976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.5E-2516156No hitNo description
SuperFamilySSF521722.7E-2416149IPR011006CheY-like superfamily
SMARTSM004483.5E-2016135IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011032.4117139IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.1E-1918134IPR001789Signal transduction response regulator, receiver domain
CDDcd001564.52E-2319131No hitNo description
Gene3DG3DSA:1.10.10.602.6E-21222281IPR009057Homeodomain-like
SuperFamilySSF466892.15E-16222281IPR009057Homeodomain-like
TIGRFAMsTIGR015579.3E-24224277IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 627 aa     Download sequence    Send to blast
MTFAESLHNK SSVLSINILV VDDDPVILEV LPKMLVKSKY RDPSVMEIKV IAEEDPVKAL  60
AILKLQRNNI DLIITDYYMP SMNGLQLKRR ITEEIGNLPV IVVSADANKE QESLTCGALG  120
FLPKPIQATD LPKIYQLALT CKRNGKSNYK ADDTGASVPQ QIKMLPEQAN VLKTRKKYSS  180
KAASRSLNST NGSGLISTDG SRKNRKRKPN GGSEDGAPSQ PSKKTKISWT DGLNDLFLQA  240
IRHIGLDKAV PKKILAFMNV PYLTRENVAS HLQKYRIFLR KVADQGLMSI MSARGIDSMF  300
RHTQIKESYF NRYTPSTSLY DTSLNNRSIY SKPGQGFGQS RLLSTTREPP VRFNQMPYNY  360
MNRSSTYETH HVGSGSNLTL PIQSNLSLAN QPFQNEELRS FFKPPVMANK IGQTSQVHGF  420
GQLGPLAINF NNNMMSSFGS FTPNQPGLGH FSYGMQSFLN NENTAYNPEP HANATTQPNL  480
ELPQLEDLNI HSGLGKTNEL PYNTSNFQSD HNKQQQGEEA SNKFELPSFF SAELNQFLSL  540
EDDSDCTFVN VNEGHSSGEI ANTFAAPETN HSYFAAPEMN PPSFNTNPNQ NQEQDANRDI  600
SDWSFLDPQD LVDDDFMNSL FNNDMN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-17223283464ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g009570.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010491325.10.0PREDICTED: putative two-component response regulator ARR21
SwissprotQ9LYP50.0ARR21_ARATH; Putative two-component response regulator ARR21
TrEMBLR0H0F30.0R0H0F3_9BRAS; Uncharacterized protein
STRINGXP_010491325.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61131737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07210.10.0response regulator 21