PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g009470.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WRKY
Protein Properties Length: 314aa    MW: 35182.5 Da    PI: 9.842
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g009470.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.25.9e-32130188260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     dDgynWrKYGqK+vkgse+prsY++Ct+++C +kkkve+s   ++++ei+Y+g+Hnh+k
  Csa20g009470.1 130 DDGYNWRKYGQKQVKGSENPRSYFKCTYPNCITKKKVETSLVKGQIIEIVYKGSHNHPK 188
                     8********************************************************85 PP
2WRKY105.92e-33244301259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+ +dpk v++tYeg+Hnh+
  Csa20g009470.1 244 EDGYRWRKYGQKVVKGNPNPRSYYKCTFTGCCVRKHVERAFQDPKSVITTYEGKHNHQ 301
                     8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.0E-28121189IPR003657WRKY domain
PROSITE profilePS5081124.604124189IPR003657WRKY domain
SuperFamilySSF1182901.44E-25125189IPR003657WRKY domain
SMARTSM007744.2E-33129188IPR003657WRKY domain
PfamPF031061.2E-23130187IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.5E-36228303IPR003657WRKY domain
SuperFamilySSF1182905.23E-29235303IPR003657WRKY domain
PROSITE profilePS5081136.368238303IPR003657WRKY domain
SMARTSM007749.7E-38243302IPR003657WRKY domain
PfamPF031064.3E-25244301IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070370Biological Processcellular heat acclimation
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MGSFDRQRVV PKFKSATPSP LPLSPSPFFT LPNGVSPADL LDSPILFTSS NILPSPTTGT  60
FPAQSLHWKN NGFVIDQNDI KYEDGKEHLD FSFTNKNTTP PLSLPSMVTQ PLPQLDVSKS  120
ESLSSNKTSD DGYNWRKYGQ KQVKGSENPR SYFKCTYPNC ITKKKVETSL VKGQIIEIVY  180
KGSHNHPKPQ STKRSASTAV AAAHQSSSHD TGEDEADAKR WKREENVKEP RVVVQTTSDI  240
DILEDGYRWR KYGQKVVKGN PNPRSYYKCT FTGCCVRKHV ERAFQDPKSV ITTYEGKHNH  300
QIPTPKRSHT SSY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-36130303877Probable WRKY transcription factor 4
2lex_A3e-36130303877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Functions with WRKY25 and WRKY33 as positive regulator of plant thermotolerance by partially participating in ethylene-response signal transduction pathway (PubMed:21336597). {ECO:0000250|UniProtKB:Q9SI37, ECO:0000269|PubMed:21336597}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00494DAPTransfer from AT5G07100Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g009470.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (PubMed:11449049). Induced by heat stress (PubMed:21336597). {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:21336597}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2246990.0AF224699.1 Arabidopsis thaliana WRKY DNA-binding protein 26 (WRKY26) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010491310.10.0PREDICTED: probable WRKY transcription factor 26 isoform X1
SwissprotQ9C5T30.0WRK26_ARATH; Probable WRKY transcription factor 26
TrEMBLR0GW420.0R0GW42_9BRAS; Uncharacterized protein
STRINGXP_010491310.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM152911518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07100.11e-173WRKY DNA-binding protein 26
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]