PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa20g009280.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | bZIP | ||||||||
Protein Properties | Length: 331aa MW: 36626.1 Da PI: 9.0124 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 30.7 | 6.6e-10 | 45 | 86 | 4 | 45 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKka++++Le+ +L++ ++L Csa20g009280.1 45 QKTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLTQLEQEL 86 5888*************************9877777766555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 6.1E-8 | 39 | 89 | No hit | No description |
SMART | SM00338 | 4.9E-8 | 42 | 105 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.438 | 44 | 88 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 6.4E-7 | 46 | 86 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 5.56E-7 | 46 | 89 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 49 | 64 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 8.0E-35 | 128 | 203 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009410 | Biological Process | response to xenobiotic stimulus | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MADTSPRTDV STDDDTDHPD LGSEGALANT AASDSSDRSK GKMDQKTLRR LAQNREAARK 60 SRLRKKAYVQ QLENSRLKLT QLEQELQRAR QQGVFISSTG DQAHSTGGNG ALAFDAEHSR 120 WLEEKNKQMN ELRSALNAHA GDAELRTIVD GVMAHYEELF RIKSNAAKND VFHLLSGMWK 180 TPAERCFLWL GGFRSSELLK LLANQLEPMT ERQLVGINNL QQTSQQAEDA LSQGMESLQQ 240 SLADTLSSGT LGSSSSGNVA SYMGQMAMAM GKLGTLEGFI RQADNLRLQT LQQMIRVLTT 300 RQSARALLAI HDYFSRLRAL SSLWLARPRE * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Required to induce the systemic acquired resistance (SAR) via the regulation of pathogenesis-related genes expression. Binding to the as-1 element of PR-1 promoter is salicylic acid-inducible and mediated by NPR1. Could also bind to the C-boxes (5'-ATGACGTCAT-3') with high affinity. {ECO:0000269|PubMed:12897257}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00492 | DAP | Transfer from AT5G06950 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa20g009280.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK117686 | 0.0 | AK117686.1 Arabidopsis thaliana At5g06950 mRNA for putative bZip transcription factor AtbZip20/tga2, complete cds, clone: RAFL17-34-M19. | |||
GenBank | ATHAHBP1B | 0.0 | D10042.1 Arabidopsis thaliana mRNA for AHBP-1b, complete cds. | |||
GenBank | BT006134 | 0.0 | BT006134.1 Arabidopsis thaliana clone U50303 putative bZIP transcription factor, HBP-1b homolog (At5g06950) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010423270.1 | 0.0 | PREDICTED: transcription factor TGA2 | ||||
Refseq | XP_010423271.1 | 0.0 | PREDICTED: transcription factor TGA2 | ||||
Refseq | XP_010452643.1 | 0.0 | PREDICTED: transcription factor TGA2 | ||||
Refseq | XP_010452644.1 | 0.0 | PREDICTED: transcription factor TGA2 | ||||
Refseq | XP_010491277.1 | 0.0 | PREDICTED: transcription factor TGA2 | ||||
Refseq | XP_010491278.1 | 0.0 | PREDICTED: transcription factor TGA2 | ||||
Refseq | XP_010491279.1 | 0.0 | PREDICTED: transcription factor TGA2 | ||||
Refseq | XP_010491280.1 | 0.0 | PREDICTED: transcription factor TGA2 | ||||
Refseq | XP_010491282.1 | 0.0 | PREDICTED: transcription factor TGA2 | ||||
Refseq | XP_010491283.1 | 0.0 | PREDICTED: transcription factor TGA2 | ||||
Swissprot | P43273 | 0.0 | TGA2_ARATH; Transcription factor TGA2 | ||||
TrEMBL | B2BDS4 | 0.0 | B2BDS4_ARATH; BZIP transcription factor TGA2 | ||||
STRING | XP_010423270.1 | 0.0 | (Camelina sativa) | ||||
STRING | XP_010452643.1 | 0.0 | (Camelina sativa) | ||||
STRING | XP_010491277.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM667 | 28 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06950.4 | 0.0 | bZIP family protein |