PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Csa20g006350.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

C2H2

Protein Properties

Length: 214aa MW: 23984.6 Da PI: 4.5247

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa20g006350.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.8	4e-05	34	56	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C+k+F L H++ H Csa20g006350.1 34 YQCKYCPKRFVKTQALGGHQNAH 56 9******************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.75E-6	32	61	No hit	No description
Pfam	PF13912	5.9E-6	34	59	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	7.0E-4	34	60	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.926	34	61	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	36	56	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MDPIDYEILS LDSSDVSDSS NDSSATEPLE SPKYQCKYCP KRFVKTQALG GHQNAHRKER 60 ELIRKQNQAF QTQLEEPDLD IYVYSNSRSH SFPYQYALPP EFEEPRYKND RSHNLTMMCD 120 QYMGSSSSSF AGLRSDPSQE TSQGRIFTEI PPQPQSQPQL PQPLLFPLSP LCLDLCLGVG 180 NSQPQHEEPN GVTNEIIAET ENVGSPLSLS LKL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa20g006350.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010491042.1	1e-156	PREDICTED: zinc finger protein 3-like
TrEMBL	Q9FF62	7e-72	Q9FF62_ARATH; C2H2 and C2HC zinc fingers superfamily protein
STRING	XP_010491042.1	1e-155	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15741	13	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05120.1	5e-52	C2H2 family protein