PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g003550.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 294aa    MW: 31639.7 Da    PI: 8.4359
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g003550.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.0011188210123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C   Fs+   L  H+r+H
  Csa20g003550.1 188 HECSICRAEFSSGQALGGHMRRH 210
                     78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139126.5E-12112137IPR007087Zinc finger, C2H2
SuperFamilySSF576671.66E-9112135No hitNo description
SMARTSM003550.041113135IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.45113140IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.600.001113150IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280115135IPR007087Zinc finger, C2H2
SuperFamilySSF576671.66E-9183210No hitNo description
Gene3DG3DSA:3.30.160.606.9E-4185212IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.3E-11187212IPR007087Zinc finger, C2H2
SMARTSM003550.05188210IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.411188215IPR007087Zinc finger, C2H2
PROSITE patternPS000280190210IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MTSVLEESGD HARLVLLIKG KRTKRQRSAS PLMTAVSSVC SGERSSLVEA REEEAAGEVE  60
FQGATDEDED MANCLMLLSQ GHKAKSSGDH KMGFFSNKKP VASLGLGLDD GVYQCKTCDK  120
SFHSFQALGG HRASHKKPKL GANVVFKCDE KKTASVSAAE TVKAGAVGSF LSLQVTRSDG  180
SKKPEKTHEC SICRAEFSSG QALGGHMRRH RGLTINANAN ATSTIKTVIS SSPSSSHHHH  240
EESKRPKTFL QLDLNLPAPE DERCCEKPKF TFASKDQILL FAAASNSLID CHH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa20g003550.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1627510.0AL162751.1 Arabidopsis thaliana DNA chromosome 5, BAC clone F12E4 (ESSA project).
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010490834.10.0PREDICTED: zinc finger protein ZAT5
TrEMBLR0H8M91e-175R0H8M9_9BRAS; Uncharacterized protein
STRINGXP_010490834.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63472745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03510.11e-165C2H2 family protein