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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Csa20g003450.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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| Family |
E2F/DP |
| Protein Properties |
Length: 395aa MW: 43443.6 Da PI: 5.9051 |
| Description |
E2F/DP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Csa20g003450.1 | genome | CSGP | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | E2F_TDP | 86.7 | 1.8e-27 | 109 | 191 | 2 | 71 |
E2F_TDP 2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71
++++Lr++++k ++ek+e+ g++t+neva+eLv+e d+kn+rRR+YD+lNVL+a+++i+k +k+ei+w+g
Csa20g003450.1 109 NGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfalpnddgtspdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWRG 191
789********...*****999*******************************************************.*******98 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0042023 | Biological Process | DNA endoreduplication |
| GO:0005634 | Cellular Component | nucleus |
| GO:0005667 | Cellular Component | transcription factor complex |
| GO:0005737 | Cellular Component | cytoplasm |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046982 | Molecular Function | protein heterodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 395 aa
Download sequence Send
to blast |
MTTTGSNSNH NNHHEDGSGR SNNNNSNNNN PSTRSWGTAV SGQSVSTSGS MGSPSSRSEQ 60
TTTVATSASD SAFLRLNNLD IQGDDAGSQG ASGGKKKKRG QRAIGPDKNG RGLRQFSMKV 120
CEKVESKGRT TYNEVADELV AEFALPNDDG TSPDQQQYDE KNIRRRVYDA LNVLMAMDII 180
SKDKKEIQWR GLPRTSLSDI EELKSERLSL RNRIEKKIAY SQELEEQYVG LQNLIQRNEH 240
LYSSGNAPSG GVALPFILVQ TRPHATVEVE ISEDMQLVHF DFNTTPFELH DDNFVLKTMK 300
FCDQPPQQPN GHNNNQLSSH NFALENSNEG PSTASAMQLE VYQPHLQPQQ HELHSQPQII 360
PTPETNEVAS AADTAPVIST SHPGTMNSNM KPEK*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Involved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AB493733 | 0.0 | AB493733.1 Arabidopsis thaliana At5g03415 mRNA for hypothetical protein, partial cds, clone: RAAt5g03415. |
| GenBank | AJ294532 | 0.0 | AJ294532.1 Arabidopsis thaliana mRNA for DP-like protein (dpb gene). |
| GenBank | AK228148 | 0.0 | AK228148.1 Arabidopsis thaliana mRNA for transcription factor - like protein, complete cds, clone: RAFL14-61-J08. |
| GenBank | AY086018 | 0.0 | AY086018.1 Arabidopsis thaliana clone 206791 mRNA, complete sequence. |
