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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa19g048710.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | CPP | ||||||||
Protein Properties | Length: 593aa MW: 63813.6 Da PI: 8.4468 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 46 | 1e-14 | 126 | 165 | 1 | 41 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 ++kk+CnCk+s+Clk+YCeCfa+g++C+ C+C +C+N+ e Csa19g048710.1 126 QKKKQCNCKHSRCLKLYCECFASGTYCDG-CNCVNCFNNVE 165 589**************************.********975 PP | |||||||
2 | TCR | 49.8 | 6.7e-16 | 212 | 250 | 2 | 40 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 + kgC+Ckks ClkkYCeCf+a+ Cse+CkC dCkN e Csa19g048710.1 212 HYKGCHCKKSGCLKKYCECFQANILCSENCKCLDCKNFE 250 789**********************************65 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 1.1E-16 | 126 | 166 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 36.371 | 127 | 251 | IPR005172 | CRC domain |
Pfam | PF03638 | 7.4E-11 | 128 | 163 | IPR005172 | CRC domain |
SMART | SM01114 | 7.1E-19 | 211 | 252 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.3E-12 | 214 | 249 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 593 aa Download sequence Send to blast |
MGEGEGEGDK LPPKKDEVIT QESMKSARQL DFTHVVHPLH SNQAPVTSAA SASSSIPSPA 60 VTATPPITTS QARPVSTTTV ATPIPPPPQP QGLLHVPIRH PERKPESPKS KPRAVGVGET 120 RDGTPQKKKQ CNCKHSRCLK LYCECFASGT YCDGCNCVNC FNNVEFDTAR REAVQSVLDR 180 NPNAFKPKIA SSPHGGRDSR EEVGEPVMLG KHYKGCHCKK SGCLKKYCEC FQANILCSEN 240 CKCLDCKNFE GSEDRQSLFH GEHSHNVAYL QHVNAAITGA IGSYGFASAP GPKRKKGQEF 300 FLNQGTKDSP THRLGQYNYW YQANTGRTPS SKTDSRAGGP SKVVYRSLLA DIIQPKNVKA 360 LCSVLVAVAG EAAKALTEKR LADQKETSVS SSVQDQGQGN NKGDEVEKAA SGNQAEKSGP 420 EDSSSDGSKG RSLSPDTLAL MCDERDTMLM VATSPNGSVE PTSQLPNGGQ DQFYAEQEKV 480 VLTKFRDCLN QIISCGELKE SNFSSSRMDL DTPAHTAVKI QPVVQQRPVA NGVSQTIKQP 540 SQRTTTTTPT PTTRLTTTTT TTTTPTPTPI PTTTSAQTQL HKTPALSEKK DL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 2e-35 | 118 | 260 | 1 | 132 | Protein lin-54 homolog |
5fd3_B | 2e-35 | 118 | 260 | 1 | 132 | Protein lin-54 homolog |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a role in development of both male and female reproductive tissues. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa19g048710.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493556 | 0.0 | AB493556.1 Arabidopsis thaliana At2g20110 mRNA for hypothetical protein, partial cds, clone: RAAt2g20110. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010489093.1 | 0.0 | PREDICTED: protein tesmin/TSO1-like CXC 6 | ||||
Swissprot | Q9SL70 | 0.0 | TCX6_ARATH; Protein tesmin/TSO1-like CXC 6 | ||||
TrEMBL | A0A1P8B2C5 | 0.0 | A0A1P8B2C5_ARATH; Tesmin/TSO1-like CXC domain-containing protein | ||||
STRING | XP_010489093.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1783 | 28 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20110.1 | 0.0 | Tesmin/TSO1-like CXC domain-containing protein |