PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa19g048440.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | AP2 | ||||||||
Protein Properties | Length: 295aa MW: 32559.7 Da PI: 6.7613 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 43.7 | 6.8e-14 | 83 | 133 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++kGVr ++ +g W AeI+dp + + r +lg+f ta++Aa a+ a+ +l g Csa19g048440.2 83 KKIKGVRKKP-SGTWSAEIWDP---NLKVRRWLGTFPTADMAAHAYNDAAAELVG 133 589****999.7*********9...335999*******************99977 PP | |||||||
2 | AP2 | 43.7 | 6.8e-14 | 219 | 269 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++kGVr ++ +g W AeI+dp + + r +lg+f ta++Aa a+ a+ +l g Csa19g048440.2 219 KKIKGVRKKP-SGTWSAEIWDP---NLKVRRWLGTFPTADMAAHAYNDAAAELVG 269 589****999.7*********9...335999*******************99977 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.33E-14 | 83 | 147 | No hit | No description |
SuperFamily | SSF54171 | 5.3E-13 | 84 | 135 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.2E-6 | 84 | 133 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.4E-21 | 84 | 149 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.189 | 84 | 143 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-18 | 86 | 135 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.18E-14 | 219 | 255 | No hit | No description |
PROSITE profile | PS51032 | 17.556 | 220 | 277 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.2E-6 | 220 | 269 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.0E-21 | 220 | 285 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.43E-13 | 220 | 271 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-18 | 222 | 271 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MDPADVPSYD RDDNFIPYVT RDEEHVIMVS ALRQVISNFE GDTSTCESRL PSLNAGPCPL 60 CGITGCNGCV FPRHEDTMEK KEKKIKGVRK KPSGTWSAEI WDPNLKVRRW LGTFPTADMA 120 AHAYNDAAAE LVGQRPAARA DVPSYDRDDN FIPYVTRDEE HVIMVSALRQ VISNFEGDTS 180 TCESRLPSLN AGPCPLCGIT GCNGCVFPRH EDTMEKKEKK IKGVRKKPSG TWSAEIWDPN 240 LKVRRWLGTF PTADMAAHAY NDAAAELVGQ RPAARGATQK GEKASTKNMR VEND* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa19g048440.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010489052.1 | 1e-102 | PREDICTED: ethylene-responsive transcription factor ERF120-like | ||||
Refseq | XP_010489053.1 | 1e-102 | PREDICTED: ethylene-responsive transcription factor ERF120-like | ||||
Swissprot | Q9SK67 | 3e-63 | EF120_ARATH; Ethylene-responsive transcription factor ERF120 | ||||
TrEMBL | D7L2W0 | 8e-65 | D7L2W0_ARALL; Uncharacterized protein | ||||
STRING | XP_010489052.1 | 1e-102 | (Camelina sativa) | ||||
STRING | XP_010489053.1 | 1e-102 | (Camelina sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20350.1 | 8e-54 | ERF family protein |