 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Csa19g036820.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
| Family |
Trihelix |
| Protein Properties |
Length: 307aa MW: 34517.6 Da PI: 10.1772 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Csa19g036820.1 | genome | CSGP | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 73.5 | 3.7e-23 | 67 | 147 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
Wt++e+l+Lie +e++++++rg lk ++Wee++ ++ ++ g+ rs++qC++k+e+l+kr++ ++++++ s +p+++q+e
Csa19g036820.1 67 WTHDETLLLIESFKEKWDAIGRGPLKSNHWEEIAVAVsARSGVDRSATQCRHKIEKLRKRFRSERQSMGPI-----SIWPFYNQME 147
***********************************998899****************************84.....68*******8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 307 aa
Download sequence Send
to blast |
MATPSPTSSP PSDSNPNSAA TPPHQIQQQP SPPQPTDPSS PPPSHSTVIA LAATTSSVAR 60
KTQPVLWTHD ETLLLIESFK EKWDAIGRGP LKSNHWEEIA VAVSARSGVD RSATQCRHKI 120
EKLRKRFRSE RQSMGPISIW PFYNQMEEMD SNPAPISARP LTRLPPNSNN NYQDDEEEDQ 180
EEEEEDERQS KSRSINYILR RPGTVNRFAG VGGGLLSWGQ RERSSKRKRN KDGGDGGERR 240
RKGARAVAAE IRAFAERVMV MEKKKMEFAK ETVRLRKEME IRRINLIQTS QAQLLQFLNS 300
SFDSSF*
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 226 | 241 | RKRNKDGGDGGERRRK |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AB028609 | 1e-168 | AB028609.2 Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K7P8. |
| GenBank | AK118157 | 1e-168 | AK118157.1 Arabidopsis thaliana At3g24860 mRNA for unknown protein, complete cds, clone: RAFL19-47-G19. |
| GenBank | BT005491 | 1e-168 | BT005491.1 Arabidopsis thaliana clone U50805 unknown protein (At3g24860) mRNA, complete cds. |
| GenBank | CP002686 | 1e-168 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
