PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

GATA

Protein Properties

Length: 239aa MW: 26112.2 Da PI: 9.5407

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa19g028720.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	58.9	6.5e-19	197	230	2	35
GATA 2 snCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 +nC++ +Tp+WRrgp g+k+LCnaCG+++rk+++ Csa19g028720.1 197 VNCNALTTPMWRRGPLGPKSLCNACGIKFRKEEE 230 39*****************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00401	2.3E-9	190	238	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	3.94E-10	193	230	No hit	No description
Pfam	PF00320	1.4E-16	195	230	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	11.688	197	226	IPR000679	Zinc finger, GATA-type
CDD	cd00202	3.05E-10	197	227	No hit	No description
Gene3D	G3DSA:3.30.50.10	1.1E-12	197	230	IPR013088	Zinc finger, NHR/GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
MENELDLTLK LGLPNSTVVE THLSLNTSTT TSTITDQGTI NTNVVVDGGR GDHNNNNEGS 60 RGGISNDGGE VFNLRRSLRG DHEVINDQGA RSNVDMNIRV YNYIFQQFVG VPNTLNVGPY 120 PMPPSPRSTP ALAVTPEFVL IDVPARRASR NNTELMANAW NETPSAHAKR LRGCDGYYRG 180 GRGGGRGEGT LRKCTNVNCN ALTTPMWRRG PLGPKSLCNA CGIKFRKEEE RKSKRNRE*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	178	186	RGGRGGGRG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa19g028720.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493625	6e-53	AB493625.1 Arabidopsis thaliana At3g20750 mRNA for hypothetical protein, partial cds, clone: RAAt3g20750.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010488061.1	1e-175	PREDICTED: GATA transcription factor 29-like
Swissprot	Q9LT45	3e-66	GAT29_ARATH; GATA transcription factor 29
TrEMBL	R0GBK1	4e-85	R0GBK1_9BRAS; Uncharacterized protein
STRING	XP_010488061.1	1e-175	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10652	22	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20750.1	5e-53	GATA transcription factor 29

Publications ? help Back to Top
Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain. Plant Physiol., 2014. 166(1): p. 293-305 [PMID:25077795]