 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Csa19g026890.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
| Family |
C3H |
| Protein Properties |
Length: 406aa MW: 45489 Da PI: 7.376 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Csa19g026890.1 | genome | CSGP | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 27.9 | 4e-09 | 112 | 136 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
ykt+ C f++ GtC+ G+ C+FaHg
Csa19g026890.1 112 YKTRMCAKFRA-GTCRNGELCNFAHG 136
9**********.*************8 PP
|
| 2 | zf-CCCH | 19.6 | 1.6e-06 | 209 | 223 | 11 | 25 |
GTS.--TTTTT-SS-S CS
zf-CCCH 11 rtG.tCkyGdrCkFaH 25
G +C+yGdrC+F+H
Csa19g026890.1 209 F-GeECPYGDRCNFIH 223
5.449*********** PP
|
| 3 | zf-CCCH | 43.8 | 4.1e-14 | 289 | 315 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
+kt+lC+ f tG+C++Gd+C+FaHg+
Csa19g026890.1 289 WKTRLCMKFEITGQCPFGDKCHFAHGQ 315
8************************97 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| Gene3D | G3DSA:4.10.1000.10 | 8.3E-15 | 109 | 144 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 8.24E-8 | 110 | 142 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 8.1E-4 | 111 | 137 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.793 | 111 | 138 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 1.1E-5 | 112 | 136 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.0033 | 198 | 225 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.09E-6 | 198 | 225 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 12.577 | 198 | 226 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 3.5E-8 | 200 | 226 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 7.85E-10 | 284 | 319 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 2.0E-15 | 286 | 318 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 1.1E-7 | 288 | 315 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 15.507 | 288 | 316 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 1.1E-11 | 289 | 315 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 406 aa
Download sequence Send
to blast |
MDSSYSDSRP MFVQSPYGGW NQNLMMDSAV NPMISEQGDL HSLSEPQSQS QSQSSQQLQQ 60
PSLKRPRLVD DNVFNLQASS FPPPTPTSSN PWMVPSLNPP PLVNKGTANI FYKTRMCAKF 120
RAGTCRNGEL CNFAHGIEDL RQPPSNWQEI VGPPAQDRDR ERERERERER ERERERERER 180
PVLAPVGNNS WDDDQKIILR MKLCRKFCFG EECPYGDRCN FIHEELSKFR EDSGKLRETS 240
VISVGTTAAD QPSVDNGTAS NHMEVVNRQG SIPVPAPMNN GGVVKTVYWK TRLCMKFEIT 300
GQCPFGDKCH FAHGQAELHN SVGRVEGEAV NAVASVSKQT VVPANESFAM KPTAQVIADS 360
SGLNEEGRRK KCLLKWSDSK KINRIYGDWI DDLPVGQKST KPVES*
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 169 | 179 | RERERERERER |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AY037226 | 0.0 | AY037226.1 Arabidopsis thaliana AT3g19360/MLD14_8 mRNA, complete cds. |
| GenBank | AY081745 | 0.0 | AY081745.1 Arabidopsis thaliana AT3g19360/MLD14_8 mRNA, complete cds. |
