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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa19g026690.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | B3 | ||||||||
Protein Properties | Length: 259aa MW: 29512.4 Da PI: 9.5424 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 48.3 | 1.8e-15 | 125 | 214 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k +++s+v+ ++ lp +f+++h+ k ++ ++tl de+ +++ k+ k++ l++GW++F +++L +gD vvF+l+ + f +v Csa19g026690.1 125 FVKPMLQSHVTGGFWMGLPLRFCKTHMPK--RDEMMTLVDEEDEEFVAKYLAAKTG----LSGGWRGFSIDHQLVDGDAVVFHLIAPTIF--KVY 211 89************************844..6679***************555555....***********************9986766..777 PP EE- CS B3 96 vfr 98 ++r Csa19g026690.1 212 IIR 214 666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.8E-19 | 116 | 215 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.06E-24 | 118 | 216 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.94E-24 | 123 | 214 | No hit | No description |
PROSITE profile | PS50863 | 10.898 | 125 | 216 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.2E-13 | 125 | 214 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.1E-20 | 125 | 216 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MVESELSYEQ IRLNRVEENK KRMGELNLNK LAQSLRVSSS SKPSPSKTRT MRTPVDFLEI 60 RRSSRAKGPP PSYKEFGLEP LKRPRRSCQR RDLLNRVYAS DEARMYGIDR AETLQSSLDP 120 DFPSFVKPML QSHVTGGFWM GLPLRFCKTH MPKRDEMMTL VDEEDEEFVA KYLAAKTGLS 180 GGWRGFSIDH QLVDGDAVVF HLIAPTIFKV YIIRVNDDGN NDSDEENDIE SNKKQEENVS 240 EARPLRSSGK RKRGAGRN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa19g026690.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493621 | 0.0 | AB493621.1 Arabidopsis thaliana At3g19184 mRNA for hypothetical protein, partial cds, clone: RAAt3g19184. | |||
GenBank | DQ487561 | 0.0 | DQ487561.1 Arabidopsis thaliana clone 0000004119_0000003454 unknown protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010487845.1 | 0.0 | PREDICTED: B3 domain-containing protein At3g19184-like isoform X1 | ||||
Swissprot | Q1G3M3 | 1e-139 | Y3918_ARATH; B3 domain-containing protein At3g19184 | ||||
TrEMBL | R0I040 | 1e-153 | R0I040_9BRAS; Uncharacterized protein | ||||
STRING | XP_010487844.1 | 1e-178 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3744 | 27 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 1e-119 | B3 family protein |
Publications ? help Back to Top | |||
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