PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

M-type_MADS

Protein Properties

Length: 399aa MW: 44896.2 Da PI: 9.957

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa19g026030.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	76.7	1.8e-24	36	83	4	51
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ++s r ++++kRr++++KKA+ELS+LC+++v+vi+++++g+l+++++ Csa19g026030.1 36 ASSSARATSLIKRRETVFKKANELSILCGIDVCVIYYGPDGELKTWPK 83 68999*****************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.1E-10	13	84	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	6.93E-17	36	116	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	12.531	37	85	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	9.9E-17	37	81	IPR002100	Transcription factor, MADS-box
CDD	cd00266	3.67E-18	45	109	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence Send to blast
MVSFSSCSLS TSSSTKKNSM RFPQIQQTVF KKPYSASSSA RATSLIKRRE TVFKKANELS 60 ILCGIDVCVI YYGPDGELKT WPKEREKVTA LALRYGALSE RKRRKGRVDL YEFLDKINKD 120 DSKKKDKKKQ KKEKPVRRVA KVKYPVWDPR FDNYSAEQLS GLVQSLERNL TRIQQRVRAV 180 VEGHGQRKIQ YLNMASQGPM MPSTMNQYFQ QQPNQHVSMF LYNHGNGNVS QIPVSASALN 240 QGQSLAPVPP ELLIYPNQDV GNYSGSFGAQ GTGINGSQNM NMLTYNNINS FNGFSKQIDQ 300 NSRVGSYSSL LEDGIDEFED SRNNFNAEDY SGFLGAQGTV TNGMQNMNMH DNNNNSVNAN 360 GHSHQFGQFQ TQQQHGAFNW DQPGSNFRSL YDLPQPLQ*

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence Send to blast

MVSFSSCSLS TSSSTKKNSM RFPQIQQTVF KKPYSASSSA RATSLIKRRE TVFKKANELS  60
ILCGIDVCVI YYGPDGELKT WPKEREKVTA LALRYGALSE RKRRKGRVDL YEFLDKINKD  120
DSKKKDKKKQ KKEKPVRRVA KVKYPVWDPR FDNYSAEQLS GLVQSLERNL TRIQQRVRAV  180
VEGHGQRKIQ YLNMASQGPM MPSTMNQYFQ QQPNQHVSMF LYNHGNGNVS QIPVSASALN  240
QGQSLAPVPP ELLIYPNQDV GNYSGSFGAQ GTGINGSQNM NMLTYNNINS FNGFSKQIDQ  300
NSRVGSYSSL LEDGIDEFED SRNNFNAEDY SGFLGAQGTV TNGMQNMNMH DNNNNSVNAN  360
GHSHQFGQFQ TQQQHGAFNW DQPGSNFRSL YDLPQPLQ*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	123	131	KKDKKKQKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305\|PubMed:26462908}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa19g026030.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010487788.1	0.0	PREDICTED: agamous-like MADS-box protein AGL103
Swissprot	Q9LSB2	1e-168	AG103_ARATH; Agamous-like MADS-box protein AGL103
TrEMBL	R0I855	1e-177	R0I855_9BRAS; Uncharacterized protein
STRING	XP_010487788.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM566	20	126

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18650.1	1e-149	AGAMOUS-like 103

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]