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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa19g025930.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | TCP | ||||||||
Protein Properties | Length: 382aa MW: 43512.4 Da PI: 7.5462 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 126.8 | 2.3e-39 | 147 | 313 | 2 | 137 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....................ssssaseceae 76 + ++drhski T+ g RdRR+Rls+++a+++F Lqd+LGfdk+skt+eWLl+qakp+i +++++ s Csa19g025930.1 147 PSRTDRHSKIKTANGTRDRRMRLSLDVAKELFGLQDMLGFDKASKTVEWLLTQAKPEITKIAKShshrcgfssgdesqnrpalgS---------- 231 5799************************************************************666666655555544444441.......... PP TCP 77 sssssasnsssg................................kaaksaakskksqksaasalnlakesrakarararertrekmriknkln 137 + ++ + k+k+++ ++ +l+k++rakar+ra++rt ekm++k +++ Csa19g025930.1 232 -----------MdtssslceltsmwtvddrgsntnttettrnkvDGRSMKRKRKRPEPHTPILKKLSKDERAKARERAKDRTMEKMMMKGRSQ 313 ...........1223333344444444444444556677777776666666788888888888*************************98776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.9E-41 | 148 | 309 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 30.377 | 149 | 207 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 9.574 | 288 | 305 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 382 aa Download sequence Send to blast |
MNNNTFSTST TISVDDYMSF PYNDHYSSQP VIPFSPSSSI DDILIHSTSN TSNNNLDHHH 60 QFLQPSPFPQ FEFDPDCALL DSFLPLNNGH DDNQTVTSDN HRPSLPFLLN NTIGDQPIEP 120 SETITHIEDS QTISTSQDPK MKKAKKPSRT DRHSKIKTAN GTRDRRMRLS LDVAKELFGL 180 QDMLGFDKAS KTVEWLLTQA KPEITKIAKS HSHRCGFSSG DESQNRPALG SMDTSSSLCE 240 LTSMWTVDDR GSNTNTTETT RNKVDGRSMK RKRKRPEPHT PILKKLSKDE RAKARERAKD 300 RTMEKMMMKG RSQSVNVVEE EVHHQGEIVK NDIINQMNSS FPMISHHRSQ EAANFSEQQQ 360 FTDLHYQFSA KPRDLMYKYN Y* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that prevents axillary bud outgrowth and delays early axillary bud development. Indirectly required for the auxin-induced control of apical dominance. {ECO:0000269|PubMed:17307924, ECO:0000269|PubMed:17452340}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa19g025930.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced during environmentally induced bud dormancy (planting density). Repressed transiently after shoot apical meristem (SAM) decapitation (release from apical dominance). {ECO:0000269|PubMed:17307924}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF062581 | 0.0 | EF062581.1 Arabidopsis thaliana teosinte branched 1-like 1 protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019096718.1 | 0.0 | PREDICTED: transcription factor TCP18-like | ||||
Swissprot | A1YKT1 | 0.0 | TCP18_ARATH; Transcription factor TCP18 | ||||
TrEMBL | A0A178VH08 | 0.0 | A0A178VH08_ARATH; TCP18 | ||||
STRING | XP_010487778.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7269 | 27 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18550.1 | 1e-172 | TCP family protein |