PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa19g023030.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family CPP
Protein Properties Length: 371aa    MW: 40377.5 Da    PI: 7.0204
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa19g023030.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR48.41.8e-155795241
             TCR  2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41
                    ++kgC+Ck+skClk+YC+Cfa+g+ C++ C C dC+N+++
  Csa19g023030.1 57 KHKGCRCKQSKCLKLYCDCFASGVVCTD-CDCADCHNNSD 95
                    789*************************.********987 PP
2TCR51.71.8e-16141177440
             TCR   4 kgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                     +gC+Ck+++ClkkYCeCf+a++ Cs++CkC dCkN +
  Csa19g023030.1 141 RGCKCKRTRCLKKYCECFQANVLCSDNCKCIDCKNVS 177
                     79*********************************76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011144.3E-165696IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163429.80657178IPR005172CRC domain
PfamPF036382.7E-125993IPR005172CRC domain
SMARTSM011143.5E-17138179IPR033467Tesmin/TSO1-like CXC domain
PfamPF036385.6E-13141176IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MTDKVDSGEF ATEKNPKELV STKLELSSNV EELLPISREP SETKDTTDQD GVNTVRKHKG  60
CRCKQSKCLK LYCDCFASGV VCTDCDCADC HNNSDNSDAR EAALKSVLGR NPNAFNGMSF  120
SSLIDKQCKA APDTKLGLLS RGCKCKRTRC LKKYCECFQA NVLCSDNCKC IDCKNVSEVF  180
QPSVFAPGLN NGKRHEGCDN PEKKIVCENI VNSLGIISPS RDSFGFNSSH DTAGSMNNAP  240
GFSAHNSPQV YQRRRHRELP QRSSCPALLF SIPDPSIQNA LGSPMSSSPS PKLPYSNKKP  300
PLGFTSTLVP DLGDICSLLL VASECATVDA EDQNRICIKT DDKVGNECTE LLCESESGQV  360
HSRSRELNHN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-19561789123Protein lin-54 homolog
5fd3_B1e-19561789123Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa19g023030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019096245.10.0PREDICTED: protein tesmin/TSO1-like CXC 8
SwissprotQ700D01e-132TCX8_ARATH; Protein tesmin/TSO1-like CXC 8
TrEMBLD7L5L00.0D7L5L0_ARALL; Predicted protein
STRINGXP_010487462.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148441520
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16160.11e-128Tesmin/TSO1-like CXC domain-containing protein