PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa19g020390.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

LBD

Protein Properties

Length: 536aa MW: 61064.2 Da PI: 6.9771

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa19g020390.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	75.5	9.7e-24	88	164	24	100
DUF260 24 aeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 ++++++f n+hklFG+sn++k++k+l + e+++am++++++++ara+dPv G++g+i+klq q+e +++el+ + ++ Csa19g020390.1 88 EDRHRQFLNAHKLFGVSNITKIIKSLTPPEKDAAMHTIMFQSDARANDPVDGCYGIIRKLQYQIEYTRNELEIVLQQ 164 35699******************************************************************998776 PP
2	DUF260	127.2	7.8e-40	296	395	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaCk++rrkCa+dC lapyfp++++++f n+hklFG+sn++k++k+l + e+++am++++++++ara+dPv G++g+i+klq q+e +++el+ Csa19g020390.1 296 ACAACKYQRRKCAPDCLLAPYFPHDRHRQFLNAHKLFGVSNITKIIKSLTPPEKDAAMHTIMFQSDARANDPVDGCYGIIRKLQYQIEYTRNELE 390 7*********************************************************************************************9 PP DUF260 96 llkee 100 + ++ Csa19g020390.1 391 IVLQQ 395 98776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	13.65	64	165	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.9E-20	88	161	IPR004883	Lateral organ boundaries, LOB
PROSITE profile	PS50891	25.454	295	396	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.3E-36	296	392	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 536 aa Download sequence Send to blast
LLLVTATRVV FNTQVYITVA GREAPGQNQS LPSHFHLCTV SQLNKKCVSS IVRRCLNSIS 60 GSIGSKTMTV DGQKQKLEES DKSCLNKEDR HRQFLNAHKL FGVSNITKII KSLTPPEKDA 120 AMHTIMFQSD ARANDPVDGC YGIIRKLQYQ IEYTRNELEI VLQQLAMFRD RAHHHQHHHH 180 QETQIQIQEP EDLSSFSSSC DLNNNSSIPY NYPLNHHVVQ EPNQQQQYCS SGNNFSGLQE 240 DMCPWKRFLA XTRQTCQTIN MPSGKPSSAF PLHPPKPTTT PLKPSSSNTN SSTNQACAAC 300 KYQRRKCAPD CLLAPYFPHD RHRQFLNAHK LFGVSNITKI IKSLTPPEKD AAMHTIMFQS 360 DARANDPVDG CYGIIRKLQY QIEYTRNELE IVLQQLAMFR DRAHHHQHHH HQETQIQIQE 420 PEDLSSFSSS CDLNNNSSIP YNYPLNHHVV QEPNQQQQYC SSGNNFSGLQ EDMWCLELQD 480 SSTTVNMKAG FIDECEDIKP VEEVSSERHE FEPHEAFVEQ RKLDLPPSSQ FIISL*

Sequence ? help Back to Top

Protein Sequence Length: 536 aa Download sequence Send to blast

LLLVTATRVV FNTQVYITVA GREAPGQNQS LPSHFHLCTV SQLNKKCVSS IVRRCLNSIS  60
GSIGSKTMTV DGQKQKLEES DKSCLNKEDR HRQFLNAHKL FGVSNITKII KSLTPPEKDA  120
AMHTIMFQSD ARANDPVDGC YGIIRKLQYQ IEYTRNELEI VLQQLAMFRD RAHHHQHHHH  180
QETQIQIQEP EDLSSFSSSC DLNNNSSIPY NYPLNHHVVQ EPNQQQQYCS SGNNFSGLQE  240
DMCPWKRFLA XTRQTCQTIN MPSGKPSSAF PLHPPKPTTT PLKPSSSNTN SSTNQACAAC  300
KYQRRKCAPD CLLAPYFPHD RHRQFLNAHK LFGVSNITKI IKSLTPPEKD AAMHTIMFQS  360
DARANDPVDG CYGIIRKLQY QIEYTRNELE IVLQQLAMFR DRAHHHQHHH HQETQIQIQE  420
PEDLSSFSSS CDLNNNSSIP YNYPLNHHVV QEPNQQQQYC SSGNNFSGLQ EDMWCLELQD  480
SSTTVNMKAG FIDECEDIKP VEEVSSERHE FEPHEAFVEQ RKLDLPPSSQ FIISL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-25	286	399	1	114	LOB family transfactor Ramosa2.1
5ly0_B	2e-25	286	399	1	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa19g020390.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC237328	0.0	AC237328.1 Arabidopsis lyrata clone JGIFAFI-41L7, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019096286.1	0.0	PREDICTED: LOB domain-containing protein 22-like
Refseq	XP_019096287.1	0.0	PREDICTED: LOB domain-containing protein 22-like
Refseq	XP_019096288.1	0.0	PREDICTED: LOB domain-containing protein 22-like
Swissprot	Q9LRW1	1e-167	LBD22_ARATH; LOB domain-containing protein 22
TrEMBL	R0HMS1	1e-171	R0HMS1_9BRAS; Uncharacterized protein
STRING	XP_010487161.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6498	26	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	1e-156	LOB domain-containing protein 22

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]