 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Csa19g019350.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
| Family |
GRAS |
| Protein Properties |
Length: 278aa MW: 31549.6 Da PI: 9.0715 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Csa19g019350.1 | genome | CSGP | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 107.5 | 1.8e-33 | 70 | 277 | 140 | 374 |
GRAS 140 pslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvksl 234
s+R+ + + ++++ ++ ++L fA++l+++++++v+ + +++ +++p+E+l+++ +++lh+l sl++er+e L+++++l
Csa19g019350.1 70 SSVRMASARATSMRDARKSYSYDSQLLGFARSLKINLQISVI--D-----KFQLTDTSPHETLIICAQFRLHHLK---YSLPEERSEALRALRRL 154
46677766666666999999********************96..3.....33444889****************8...88899999********* PP
GRAS 235 sPkvvvvveqeadh.nsesFlerflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpv 327
+Pk v+++e++ + +s++F++ f+++ley ++++ds+++++ +e+ eer+ +E++ e + kW er++eaGF +
Csa19g019350.1 155 RPKGVILCENNGEDnTSGDFAAAFSRKLEYLWKFLDSTSSGFKEENsEERKLIEEM-----------DE---------GKDKWYERMREAGFAAE 229
***********9995778********************999877765788888888...........44.........556************** PP
GRAS 328 plsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
+++e+a + ak+llrk++ +++ r+e+ + + l+Wk++++ ++S W+
Csa19g019350.1 230 AFGEDAIDGAKSLLRKYDkNWEIRMEDGDTFAGLTWKGEAVSFCSLWK 277
******************666666666666666**************8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 278 aa
Download sequence Send
to blast |
MPRSSTNPHS RSALVLPLGR PPRSTPKMGV HDVRSHSTSK LEVDTKLEVG EHKNDKHERV 60
SVRVSSVRAS SVRMASARAT SMRDARKSYS YDSQLLGFAR SLKINLQISV IDKFQLTDTS 120
PHETLIICAQ FRLHHLKYSL PEERSEALRA LRRLRPKGVI LCENNGEDNT SGDFAAAFSR 180
KLEYLWKFLD STSSGFKEEN SEERKLIEEM DEGKDKWYER MREAGFAAEA FGEDAIDGAK 240
SLLRKYDKNW EIRMEDGDTF AGLTWKGEAV SFCSLWK*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC237328 | 1e-104 | AC237328.1 Arabidopsis lyrata clone JGIFAFI-41L7, complete sequence. |
