PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Csa19g018780.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

C2H2

Protein Properties

Length: 263aa MW: 30545.7 Da PI: 8.4564

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa19g018780.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.9	7.8e-05	125	146	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C Cgk F + ++L H+r+H Csa19g018780.1 125 RCCLCGKAFQTMHSLFGHMRRH 146 7********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.02E-6	54	78	No hit	No description
PROSITE profile	PS50157	9.224	56	83	IPR007087	Zinc finger, C2H2
SMART	SM00355	1.2	56	78	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	58	78	IPR007087	Zinc finger, C2H2
Pfam	PF13912	0.0048	58	78	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	3.02E-6	119	146	No hit	No description
PROSITE profile	PS50157	10.118	124	146	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.072	124	146	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	6.4E-4	125	148	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	126	146	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MLKRIRDAYG DESSSSSESE EFHRRKIPVK VKLPDERSED EEDESFTQQQ LPHRKHFCVI 60 CKKQFSSGKA YGGHVRIHST EYNNKGKMKK KLKMTKKNKR KIGLVKKDKE KEIDLISTDM 120 EGKIRCCLCG KAFQTMHSLF GHMRRHPDRS WKGIRPPPPQ DKFKHSYLDD DDDEEEEDGE 180 MSRSMMMSRH VTADVQEAAY ILMMIAYTSS KYWDGMKKAM ESPKAEVRSS SCYKEKDKVL 240 GDDGMDDKKE GFDCRYEDKD GN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa19g018780.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010418991.1	1e-126	PREDICTED: uncharacterized protein LOC104704634
TrEMBL	D7LFE4	4e-97	D7LFE4_ARALL; Uncharacterized protein
STRING	XP_010418991.1	1e-125	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11455	20	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26940.1	2e-86	C2H2 family protein