PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa19g017040.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 250aa    MW: 28499.1 Da    PI: 7.2778
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa19g017040.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.96.2e-152572148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W+ eE e+l   +++ G  +W++ ++  g+ R++k+c++rw +yl
   Csa19g017040.1 25 RGPWSDEESERLRAFIEKNGHQNWRSLPKLAGLMRCGKSCRLRWINYL 72
                     89********************************************97 PP
2Myb_DNA-binding55.51.4e-1778123148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T+eE++ ++++++ +G++ W++Ia++++ gRt++++k+ w+++l
   Csa19g017040.1  78 RGNFTKEEEDTIIHLHQAHGNK-WSKIASHFP-GRTDNEIKNVWNTHL 123
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.5E-211675IPR009057Homeodomain-like
PROSITE profilePS5129416.1392072IPR017930Myb domain
SuperFamilySSF466892.16E-2923119IPR009057Homeodomain-like
SMARTSM007179.0E-102474IPR001005SANT/Myb domain
PfamPF002494.2E-132572IPR001005SANT/Myb domain
CDDcd001671.17E-72772No hitNo description
PROSITE profilePS5129425.44273127IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.2E-2876127IPR009057Homeodomain-like
SMARTSM007174.5E-1677125IPR001005SANT/Myb domain
PfamPF002491.6E-1678123IPR001005SANT/Myb domain
CDDcd001677.38E-1180123No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MALVVSLGVM GKRRAPCCDK SQVRRGPWSD EESERLRAFI EKNGHQNWRS LPKLAGLMRC  60
GKSCRLRWIN YLRPGLKRGN FTKEEEDTII HLHQAHGNKW SKIASHFPGR TDNEIKNVWN  120
THLKKRLMKR KSSSSSSEED VTNHSVSSTS SSSSSASSVL KDVIINNEKP NQEEEFEEIF  180
VEQMACGFEV NAPQSLECLF GDSHILPPIS KPDLLEIHGK SDHEFWSRLV EPGFDDYNEW  240
LNFLDNQTC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-22251277108B-MYB
1mse_C1e-22251274105C-Myb DNA-Binding Domain
1msf_C1e-22251274105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in metal ions homeostasis, including iron ions (Fe) acquisition, via the regulation of NAS4 and NAS2 genes expression. Necessary for plant survival in alkaline soil where iron availability is greatly restricted. Triggers tolerance to nickel (Ni) and zinc (Zn) ions. {ECO:0000269|PubMed:24278034}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa19g017040.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates strongly in the root stele and in the outer layers of the lateral roots when exposed to iron (Fe)-deficient conditions (PubMed:24278034). Slightly induced by ethylene and by darkness conditions (PubMed:9839469). Accumulates upon potassium (K) depletion (PubMed:15489280). Induced by zinc (Zn) and cadmium (Cd) ions (PubMed:18088336). {ECO:0000269|PubMed:15489280, ECO:0000269|PubMed:18088336, ECO:0000269|PubMed:24278034, ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5195860.0AY519586.1 Arabidopsis thaliana MYB transcription factor (At3g12820) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010487009.11e-179PREDICTED: myb-related protein Myb4-like
SwissprotQ9LTV41e-143MYB10_ARATH; Transcription factor MYB10
TrEMBLR0HT361e-138R0HT36_9BRAS; Uncharacterized protein
STRINGXP_010487009.11e-179(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM140961624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12820.11e-135myb domain protein 10
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]